Strain identifier

BacDive ID: 17054

Type strain: No

Species: Thermosipho sp.

Strain Designation: RI 19.B2

Strain history: <- F.A. Rainey, RI 19.B2

NCBI tax ID(s): 117504 (species)

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General

@ref: 2733

BacDive-ID: 17054

DSM-Number: 6568

keywords: 16S sequence, Bacteria, anaerobe, thermophilic

description: Thermosipho sp. RI 19.B2 is an anaerobe, thermophilic bacterium that was isolated from spring.

NCBI tax id

  • NCBI tax id: 117504
  • Matching level: species

strain history

  • @ref: 2733
  • history: <- F.A. Rainey, RI 19.B2

doi: 10.13145/bacdive17054.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/thermotogota
  • domain: Bacteria
  • phylum: Thermotogota
  • class: Thermotogae
  • order: Thermotogales
  • family: Fervidobacteriaceae
  • genus: Thermosipho
  • species: Thermosipho sp.
  • full scientific name: Thermosipho Huber et al. 1989

@ref: 2733

domain: Bacteria

phylum: Thermotogae

class: Thermotogae

order: Thermotogales

family: Fervidobacteriaceae

genus: Thermosipho

species: Thermosipho sp.

full scientific name: Thermosipho sp.

strain designation: RI 19.B2

type strain: no

Culture and growth conditions

culture medium

  • @ref: 2733
  • name: THERMOTOGA TF(C) MEDIUM (DSMZ Medium 613)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/613
  • composition: Name: THERMOTOGA TF(C) MEDIUM (DSMZ Medium 613) Composition: D-Glucose 2.96736 g/l Yeast extract 1.97824 g/l Trypticase peptone 1.97824 g/l K2HPO4 1.58259 g/l MgCl2 x 6 H2O 1.38477 g/l Na2HPO4 x H2O 0.98912 g/l NH4Cl 0.49456 g/l L-Cysteine HCl x H2O 0.296736 g/l Na2S x 9 H2O 0.296736 g/l CaCl2 x 2 H2O 0.0593472 g/l MgSO4 x 7 H2O 0.0296736 g/l Nitrilotriacetic acid 0.0148368 g/l NaCl 0.0098912 g/l MnSO4 x H2O 0.0049456 g/l ZnSO4 x 7 H2O 0.00178042 g/l CoSO4 x 7 H2O 0.00178042 g/l FeSO4 x 7 H2O 0.00098912 g/l Sodium resazurin 0.00049456 g/l NiCl2 x 6 H2O 0.000296736 g/l AlK(SO4)2 x 12 H2O 0.000197824 g/l CuSO4 x 5 H2O 9.8912e-05 g/l H3BO3 9.8912e-05 g/l Na2MoO4 x 2 H2O 9.8912e-05 g/l Pyridoxine hydrochloride 9.8912e-05 g/l (DL)-alpha-Lipoic acid 4.9456e-05 g/l p-Aminobenzoic acid 4.9456e-05 g/l Calcium D-(+)-pantothenate 4.9456e-05 g/l Thiamine HCl 4.9456e-05 g/l Riboflavin 4.9456e-05 g/l Nicotinic acid 4.9456e-05 g/l Biotin 1.97824e-05 g/l Folic acid 1.97824e-05 g/l Na2WO4 x 2 H2O 3.95648e-06 g/l Na2SeO3 x 5 H2O 2.96736e-06 g/l Vitamin B12 9.8912e-07 g/l Distilled water

culture temp

  • @ref: 2733
  • growth: positive
  • type: growth
  • temperature: 65
  • range: thermophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 2733
  • oxygen tolerance: anaerobe

Isolation, sampling and environmental information

isolation

  • @ref: 2733
  • sample type: spring
  • geographic location: Kermadec Archipelago, Raoul Island, Green Lake
  • country: New Zealand
  • origin.country: NZL
  • continent: Australia and Oceania

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Aquatic
  • Cat3: #Spring

taxonmaps

  • @ref: 69479
  • File name: preview.99_547.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_93;96_347;97_387;98_444;99_547&stattab=map
  • Last taxonomy: Thermosipho
  • 16S sequence: AJ272023
  • Sequence Identity:
  • Total samples: 46
  • aquatic counts: 33
  • animal counts: 12
  • plant counts: 1

Sequence information

16S sequences

  • @ref: 20218
  • description: Thermosipho sp. DSM 6568 partial 16S rRNA gene, strain DSM 6568, RI19.B2
  • accession: AJ272023
  • length: 1412
  • database: ena
  • NCBI tax ID: 117504

GC content

  • @ref: 2733
  • GC-content: 32.0

External links

@ref: 2733

culture collection no.: DSM 6568

straininfo link

  • @ref: 86054
  • straininfo: 48239

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
2733Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 6568)https://www.dsmz.de/collection/catalogue/details/culture/DSM-6568
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
86054Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID48239.1StrainInfo: A central database for resolving microbial strain identifiers