Strain identifier
BacDive ID: 17054
Type strain:
Species: Thermosipho sp.
Strain Designation: RI 19.B2
Strain history: <- F.A. Rainey, RI 19.B2
NCBI tax ID(s): 117504 (species)
version 8.1 (current version)
General
@ref: 2733
BacDive-ID: 17054
DSM-Number: 6568
keywords: 16S sequence, Bacteria, anaerobe, thermophilic
description: Thermosipho sp. RI 19.B2 is an anaerobe, thermophilic bacterium that was isolated from spring.
NCBI tax id
- NCBI tax id: 117504
- Matching level: species
strain history
- @ref: 2733
- history: <- F.A. Rainey, RI 19.B2
doi: 10.13145/bacdive17054.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/thermotogota
- domain: Bacteria
- phylum: Thermotogota
- class: Thermotogae
- order: Thermotogales
- family: Fervidobacteriaceae
- genus: Thermosipho
- species: Thermosipho sp.
- full scientific name: Thermosipho Huber et al. 1989
@ref: 2733
domain: Bacteria
phylum: Thermotogae
class: Thermotogae
order: Thermotogales
family: Fervidobacteriaceae
genus: Thermosipho
species: Thermosipho sp.
full scientific name: Thermosipho sp.
strain designation: RI 19.B2
type strain: no
Culture and growth conditions
culture medium
- @ref: 2733
- name: THERMOTOGA TF(C) MEDIUM (DSMZ Medium 613)
- growth: yes
- link: https://mediadive.dsmz.de/medium/613
- composition: Name: THERMOTOGA TF(C) MEDIUM (DSMZ Medium 613) Composition: D-Glucose 2.96736 g/l Yeast extract 1.97824 g/l Trypticase peptone 1.97824 g/l K2HPO4 1.58259 g/l MgCl2 x 6 H2O 1.38477 g/l Na2HPO4 x H2O 0.98912 g/l NH4Cl 0.49456 g/l L-Cysteine HCl x H2O 0.296736 g/l Na2S x 9 H2O 0.296736 g/l CaCl2 x 2 H2O 0.0593472 g/l MgSO4 x 7 H2O 0.0296736 g/l Nitrilotriacetic acid 0.0148368 g/l NaCl 0.0098912 g/l MnSO4 x H2O 0.0049456 g/l ZnSO4 x 7 H2O 0.00178042 g/l CoSO4 x 7 H2O 0.00178042 g/l FeSO4 x 7 H2O 0.00098912 g/l Sodium resazurin 0.00049456 g/l NiCl2 x 6 H2O 0.000296736 g/l AlK(SO4)2 x 12 H2O 0.000197824 g/l CuSO4 x 5 H2O 9.8912e-05 g/l H3BO3 9.8912e-05 g/l Na2MoO4 x 2 H2O 9.8912e-05 g/l Pyridoxine hydrochloride 9.8912e-05 g/l (DL)-alpha-Lipoic acid 4.9456e-05 g/l p-Aminobenzoic acid 4.9456e-05 g/l Calcium D-(+)-pantothenate 4.9456e-05 g/l Thiamine HCl 4.9456e-05 g/l Riboflavin 4.9456e-05 g/l Nicotinic acid 4.9456e-05 g/l Biotin 1.97824e-05 g/l Folic acid 1.97824e-05 g/l Na2WO4 x 2 H2O 3.95648e-06 g/l Na2SeO3 x 5 H2O 2.96736e-06 g/l Vitamin B12 9.8912e-07 g/l Distilled water
culture temp
- @ref: 2733
- growth: positive
- type: growth
- temperature: 65
- range: thermophilic
Physiology and metabolism
oxygen tolerance
- @ref: 2733
- oxygen tolerance: anaerobe
Isolation, sampling and environmental information
isolation
- @ref: 2733
- sample type: spring
- geographic location: Kermadec Archipelago, Raoul Island, Green Lake
- country: New Zealand
- origin.country: NZL
- continent: Australia and Oceania
isolation source categories
- Cat1: #Environmental
- Cat2: #Aquatic
- Cat3: #Spring
taxonmaps
- @ref: 69479
- File name: preview.99_547.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_93;96_347;97_387;98_444;99_547&stattab=map
- Last taxonomy: Thermosipho
- 16S sequence: AJ272023
- Sequence Identity:
- Total samples: 46
- aquatic counts: 33
- animal counts: 12
- plant counts: 1
Sequence information
16S sequences
- @ref: 20218
- description: Thermosipho sp. DSM 6568 partial 16S rRNA gene, strain DSM 6568, RI19.B2
- accession: AJ272023
- length: 1412
- database: ena
- NCBI tax ID: 117504
GC content
- @ref: 2733
- GC-content: 32.0
External links
@ref: 2733
culture collection no.: DSM 6568
straininfo link
- @ref: 86054
- straininfo: 48239
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
2733 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 6568) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-6568 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
86054 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID48239.1 | StrainInfo: A central database for resolving microbial strain identifiers |