Strain identifier
BacDive ID: 17034
Type strain:
Species: Fervidobacterium islandicum
Strain Designation: H21
Strain history: <- K.O. Stetter and R. Huber, H21
NCBI tax ID(s): 2423 (species)
General
@ref: 2314
BacDive-ID: 17034
DSM-Number: 5733
keywords: 16S sequence, Bacteria, anaerobe, thermophilic
description: Fervidobacterium islandicum H21 is an anaerobe, thermophilic bacterium that was isolated from hot spring.
NCBI tax id
- NCBI tax id: 2423
- Matching level: species
strain history
- @ref: 2314
- history: <- K.O. Stetter and R. Huber, H21
doi: 10.13145/bacdive17034.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/thermotogota
- domain: Bacteria
- phylum: Thermotogota
- class: Thermotogae
- order: Thermotogales
- family: Fervidobacteriaceae
- genus: Fervidobacterium
- species: Fervidobacterium islandicum
- full scientific name: Fervidobacterium islandicum Huber et al. 1991
@ref: 2314
domain: Bacteria
phylum: Thermotogae
class: Thermotogae
order: Thermotogales
family: Fervidobacteriaceae
genus: Fervidobacterium
species: Fervidobacterium islandicum
full scientific name: Fervidobacterium islandicum Huber et al. 1991
strain designation: H21
type strain: yes
Culture and growth conditions
culture medium
- @ref: 2314
- name: FERVIDOBACTERIUM ISLANDICUM MEDIUM (DSMZ Medium 501)
- growth: yes
- link: https://mediadive.dsmz.de/medium/501
- composition: Name: FERVIDOBACTERIUM ISLANDICUM MEDIUM (DSMZ Medium 501) Composition: D-Glucose 2.0 g/l (NH4)2SO4 1.3 g/l Yeast extract 1.0 g/l Na2S x 9 H2O 0.5 g/l KH2PO4 0.28 g/l MgSO4 x 7 H2O 0.25 g/l CaCl2 x 2 H2O 0.07 g/l FeCl3 x 6 H2O 0.02 g/l Na2B4O7 x 10 H2O 0.0045 g/l MnCl2 x 4 H2O 0.0018 g/l Sodium resazurin 0.0005 g/l ZnSO4 x 7 H2O 0.00022 g/l CuCl2 x 2 H2O 5e-05 g/l VOSO4 x 2 H2O 3e-05 g/l Na2MoO4 x 2 H2O 3e-05 g/l CoSO4 x 7 H2O 1e-05 g/l Distilled water
culture temp
- @ref: 2314
- growth: positive
- type: growth
- temperature: 65
- range: thermophilic
Physiology and metabolism
oxygen tolerance
- @ref: 2314
- oxygen tolerance: anaerobe
Isolation, sampling and environmental information
isolation
- @ref: 2314
- sample type: hot spring
- geographic location: Hveragerdi
- country: Iceland
- origin.country: ISL
- continent: Europe
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Environmental | #Aquatic | #Thermal spring |
#Condition | #Thermophilic (>45°C) |
Safety information
risk assessment
- @ref: 2314
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 2314
- description: Fervidobacterium islandicum strain H-21 16S ribosomal RNA gene, partial sequence
- accession: M59176
- length: 1456
- database: ena
- NCBI tax ID: 2423
GC content
- @ref: 2314
- GC-content: 41.4
External links
@ref: 2314
culture collection no.: DSM 5733, ATCC 49647
straininfo link
- @ref: 86034
- straininfo: 42602
literature
- topic: Phylogeny
- Pubmed-ID: 12361295
- title: Development of fluorescent adjacent hybridization probes and their application in real-time PCR for the simultaneous detection and identification of Fervidobacterium and Caloramator.
- authors: Connolly GR, Patel BKC
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/00207713-52-5-1837
- year: 2002
- mesh: Bacteria, Anaerobic/classification/*genetics/isolation & purification, Base Sequence, Carbocyanines, DNA Primers, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Fluorescein-5-isothiocyanate, *Fluorescent Dyes, Molecular Probe Techniques, Molecular Sequence Data, Nucleic Acid Hybridization, *Oligonucleotide Probes, Polymerase Chain Reaction, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Sequence Homology, Nucleic Acid, Species Specificity
- topic2: Genetics
Reference
@id | authors | catalogue | doi/url | title |
---|---|---|---|---|
2314 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 5733) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-5733 | |
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
86034 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID42602.1 | StrainInfo: A central database for resolving microbial strain identifiers |