Strain identifier
BacDive ID: 170248
Type strain: 
Species: Acetobacter pasteurianus
Strain Designation: LMD 53.6
NCBI tax ID(s): 438 (species)
version 9.3 (current version)
General
@ref: 20215
BacDive-ID: 170248
keywords: genome sequence, 16S sequence, Bacteria, Gram-negative
description: Acetobacter pasteurianus LMD 53.6 is a Gram-negative bacterium of the family Acetobacteraceae.
NCBI tax id
- NCBI tax id: 438
- Matching level: species
doi: 10.13145/bacdive170248.20250331.9.3
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Rhodospirillales
- family: Acetobacteraceae
- genus: Acetobacter
- species: Acetobacter pasteurianus
- full scientific name: Acetobacter pasteurianus (Hansen 1879) Beijerinck and Folpmers 1916 (Approved Lists 1980)
synonyms
@ref synonym 20215 Acetobacter peroxydans 20215 Acetobacter paradoxus 20215 Acetobacter paradoxum 20215 Acetobacter pasteurianus subsp. ascendens 20215 Bacterium ascendens 20215 Acetobacter ascendens 20215 Acetobacter pasteurianus subsp. paradoxus 20215 Mycoderma pasteurianum
@ref: 20215
domain: Bacteria
phylum: Pseudomonadota
class: Alphaproteobacteria
order: Rhodospirillales
family: Acetobacteraceae
genus: Acetobacter
species: Acetobacter pasteurianus subsp. paradoxus
full scientific name: Acetobacter pasteurianus subsp. paradoxus (Frateur 1950) De Ley and Frateur 1974 (Approved Lists 1980)
strain designation: LMD 53.6
type strain: no
Morphology
cell morphology
- @ref: 125438
- gram stain: negative
- confidence: 94.333
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 125439 | no | 94.4 |
| 125438 | no | 91.716 |
Safety information
risk assessment
- @ref: 20215
- biosafety level: 1
- biosafety level comment: Risk group
Sequence information
16S sequences
- @ref: 20215
- description: Acetobacter pasteurianus subsp. paradoxus strain LMG 1591 16S ribosomal RNA gene, partial sequence
- accession: GU205100
- length: 1462
- database: nuccore
- NCBI tax ID: 481146
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Acetobacter ascendens LMG 1591 | GCA_001766255 | complete | ncbi | 481146 |
| 66792 | Acetobacter pasteurianus subsp. paradoxus strain LMG 1591 | 940260.6 | plasmid | patric | 481146 |
| 66792 | Acetobacter pasteurianus subsp. paradoxus strain LMG 1591 | 940260.4 | plasmid | patric | 481146 |
| 66792 | Acetobacter pasteurianus subsp. paradoxus strain LMG 1591 | 940260.3 | complete | patric | 481146 |
| 66792 | Acetobacter pasteurianus subsp. paradoxus strain LMG 1591 | 940260.5 | plasmid | patric | 481146 |
Genome-based predictions
predictions
| @ref | model | trait | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positive | Positive reaction to Gram-staining | no | 94.333 | no |
| 125438 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 88.657 | no |
| 125438 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 75.381 | no |
| 125438 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 91.716 | no |
| 125438 | thermophile | thermophilic | Ability to grow at temperatures above or equal to 45°C | no | 96.895 | no |
| 125438 | motile2+ | flagellated | Ability to perform flagellated movement | no | 77.013 | no |
| 125439 | BacteriaNet | spore_formation | Ability to form endo- or exospores | no | 94.4 | |
| 125439 | BacteriaNet | motility | Ability to perform movement | no | 50.7 | |
| 125439 | BacteriaNet | gram_stain | Reaction to gram-staining | negative | 89 | |
| 125439 | BacteriaNet | oxygen_tolerance | Oxygenic conditions needed for growth | obligate aerobe | 89.4 |
External links
@ref: 20215
culture collection no.: NCCB 53006, LMG 1591
straininfo link
- @ref: 115944
- straininfo: 14583
literature
- topic: Phylogeny
- Pubmed-ID: 29655875
- title: Acetobacter oryzifermentans sp. nov., isolated from Korean traditional vinegar and reclassification of the type strains of Acetobacter pasteurianus subsp. ascendens (Henneberg 1898) and Acetobacter pasteurianus subsp. paradoxus (Frateur 1950) as Acetobacter ascendens sp. nov., comb. nov.
- authors: Kim KH, Cho GY, Chun BH, Weckx S, Moon JY, Yeo SH, Jeon CO
- journal: Syst Appl Microbiol
- DOI: 10.1016/j.syapm.2018.03.003
- year: 2018
- mesh: *Acetic Acid, Acetobacter/*classification/*genetics/isolation & purification, Bacterial Typing Techniques/*methods, Base Composition, DNA, Bacterial/genetics, Fatty Acids/analysis, Nucleic Acid Hybridization, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA
- topic2: Transcriptome
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
| 115944 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID14583.1 |
| 125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann | Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets | 10.1101/2024.08.12.607695 |
| 125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy | deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 | https://github.com/GenomeNet/deepG |