Strain identifier
BacDive ID: 17019
Type strain: 
Species: Thermoplasma volcanium
Strain Designation: KD 3
Strain history: IFO 15439 <-- DSM 4300 <-- A. Segerer and K. O. Stetter KD3.
NCBI tax ID(s): 50339 (species)
General
@ref: 1644
BacDive-ID: 17019
DSM-Number: 4300
keywords: Archaea, thermophilic
description: Thermoplasma volcanium KD 3 is a thermophilic archaeon that was isolated from acid continental solfatara.
NCBI tax id
- NCBI tax id: 50339
- Matching level: species
strain history
| @ref | history |
|---|---|
| 1644 | <- A. Segerer and K.O. Stetter, KD 3 |
| 67770 | IFO 15439 <-- DSM 4300 <-- A. Segerer and K. O. Stetter KD3. |
doi: 10.13145/bacdive17019.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/archaea
- keyword: phylum/methanobacteriota
- domain: Archaea
- phylum: Methanobacteriota
- class: Thermoplasmata
- order: Thermoplasmatales
- family: Thermoplasmataceae
- genus: Thermoplasma
- species: Thermoplasma volcanium
- full scientific name: Thermoplasma volcanium Segerer et al. 1988
@ref: 1644
domain: Archaea
phylum: Euryarchaeota
class: Thermoplasmata
order: Thermoplasmatales
family: Thermoplasmataceae
genus: Thermoplasma
species: Thermoplasma volcanium
full scientific name: Thermoplasma volcanium Segerer et al. 1988
strain designation: KD 3
type strain: no
Culture and growth conditions
culture medium
- @ref: 1644
- name: THERMOPLASMA VOLCANIUM MEDIUM (DSMZ Medium 398)
- growth: yes
- link: https://mediadive.dsmz.de/medium/398
- composition: Name: THERMOPLASMA VOLCANIUM MEDIUM (DSMZ Medium 398) Composition: Glucose 5.0 g/l Sulfur 4.0 g/l KH2PO4 3.0 g/l Yeast extract 1.0 g/l MgSO4 x 7 H2O 1.0 g/l CaCl2 x 2 H2O 0.25 g/l (NH4)2SO4 0.2 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 1644 | positive | growth | 60 | thermophilic |
| 67770 | positive | growth | 60 | thermophilic |
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 1644 | acid continental solfatara | Java, Bandung, Kawa Domas | Indonesia | IDN | Asia |
| 67770 | Solfatara | Kawah Domas, Bandung | Indonesia | IDN | Asia |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Terrestrial | #Volcanic |
| #Condition | #Acidic |
Safety information
risk assessment
- @ref: 1644
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
GC content
| @ref | GC-content | method |
|---|---|---|
| 1644 | 40.0 | |
| 67770 | 40 | thermal denaturation, midpoint method (Tm) |
External links
@ref: 1644
culture collection no.: DSM 4300, JCM 9572, IFO 15439, NBRC 15439
straininfo link
- @ref: 86020
- straininfo: 47826
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 1644 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 4300) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-4300 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
| 86020 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID47826.1 | StrainInfo: A central database for resolving microbial strain identifiers |