Strain identifier
BacDive ID: 170183
Type strain: 
Species: Abyssalbus ytuae
Strain Designation: MT3330
version 8.1 (current version)
General
@ref: 20215
BacDive-ID: 170183
keywords: genome sequence, 16S sequence, Bacteria
description: Abyssalbus ytuae MT3330 is a bacterium of the family Flavobacteriaceae.
doi: 10.13145/bacdive170183.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacteroidota
- domain: Bacteria
- phylum: Bacteroidota
- class: Flavobacteriia
- order: Flavobacteriales
- family: Flavobacteriaceae
- genus: Abyssalbus
- species: Abyssalbus ytuae
- full scientific name: Abyssalbus ytuae Xu et al. 2022
@ref: 20215
domain: Bacteria
phylum: Bacteroidota
class: Flavobacteriia
order: Flavobacteriales
family: Flavobacteriaceae
genus: Abyssalbus
species: Abyssalbus ytuae
full scientific name: Abyssalbus ytuae Xu et al. 2022
strain designation: MT3330
type strain: yes
Sequence information
16S sequences
- @ref: 20215
- description: Abyssalbus ytuae strain MT3330 16S ribosomal RNA gene, partial sequence
- accession: ON495953
- length: 1433
- NCBI tax ID: 2926907
Genome sequences
- @ref: 66792
- description: Abyssalbus ytuae MT3330
- accession: GCA_022807975
- assembly level: complete
- database: ncbi
- NCBI tax ID: 2926907
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| flagellated | no | 95.724 | no |
| gram-positive | no | 98.493 | no |
| anaerobic | no | 99.103 | no |
| aerobic | yes | 80.896 | no |
| halophile | no | 68.181 | no |
| spore-forming | no | 96.763 | no |
| motile | no | 91.13 | no |
| glucose-ferment | no | 84.796 | no |
| thermophile | no | 97.534 | no |
| glucose-util | yes | 85.629 | no |
External links
@ref: 20215
culture collection no.: MCCC 1K06012, KCTC 82823
literature
- topic: Phylogeny
- Pubmed-ID: 35850932
- title: Description of Abyssalbus ytuae gen. nov., sp. nov., a novel member of the family Flavobacteriaceae isolated from the sediment of the Mariana Trench.
- authors: Xu X, Zhang S, Sun X, Xu X, Zhang J
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijsem.0.005459
- year: 2022
- mesh: Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, *Flavobacteriaceae, Phylogeny, RNA, Ribosomal, 16S/genetics, *Seawater/microbiology, Sequence Analysis, DNA, Vitamin K 2/chemistry
- topic2: Transcriptome
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |