Strain identifier
BacDive ID: 17018
Type strain:
Species: Thermoplasma volcanium
Strain Designation: GSS 1, GSS1
Strain history: IFO 15438 <-- DSM 4299 <-- A. Segerer and K. O. Stetter GSS1.
NCBI tax ID(s): 50339 (species)
General
@ref: 1643
BacDive-ID: 17018
DSM-Number: 4299
keywords: genome sequence, 16S sequence, Archaea, thermophilic
description: Thermoplasma volcanium GSS 1 is a thermophilic archaeon that was isolated from acid continental solfatara.
NCBI tax id
- NCBI tax id: 50339
- Matching level: species
strain history
@ref | history |
---|---|
1643 | <- A. Segerer and K.O. Stetter, GSS 1 |
67770 | IFO 15438 <-- DSM 4299 <-- A. Segerer and K. O. Stetter GSS1. |
doi: 10.13145/bacdive17018.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/archaea
- keyword: phylum/methanobacteriota
- domain: Archaea
- phylum: Methanobacteriota
- class: Thermoplasmata
- order: Thermoplasmatales
- family: Thermoplasmataceae
- genus: Thermoplasma
- species: Thermoplasma volcanium
- full scientific name: Thermoplasma volcanium Segerer et al. 1988
@ref: 1643
domain: Archaea
phylum: Euryarchaeota
class: Thermoplasmata
order: Thermoplasmatales
family: Thermoplasmataceae
genus: Thermoplasma
species: Thermoplasma volcanium
full scientific name: Thermoplasma volcanium Segerer et al. 1988
strain designation: GSS 1, GSS1
type strain: yes
Culture and growth conditions
culture medium
- @ref: 1643
- name: THERMOPLASMA VOLCANIUM MEDIUM (DSMZ Medium 398)
- growth: yes
- link: https://mediadive.dsmz.de/medium/398
- composition: Name: THERMOPLASMA VOLCANIUM MEDIUM (DSMZ Medium 398) Composition: Glucose 5.0 g/l Sulfur 4.0 g/l KH2PO4 3.0 g/l Yeast extract 1.0 g/l MgSO4 x 7 H2O 1.0 g/l CaCl2 x 2 H2O 0.25 g/l (NH4)2SO4 0.2 g/l Distilled water
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
1643 | positive | growth | 60 | thermophilic |
67770 | positive | growth | 60 | thermophilic |
Isolation, sampling and environmental information
isolation
@ref | sample type | geographic location | country | origin.country | continent |
---|---|---|---|---|---|
1643 | acid continental solfatara | Vulcano island | Italy | ITA | Europe |
67770 | Solfatara, Vulcano | Porto di Levante | Italy | ITA | Europe |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Environmental | #Terrestrial | #Volcanic |
#Condition | #Acidic |
Safety information
risk assessment
- @ref: 1643
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
@ref | description | accession | length | database | NCBI tax ID |
---|---|---|---|---|---|
20218 | Thermoplasma volcanium 16S ribosomal RNA gene, partial sequence | AF339746 | 1402 | ena | 50339 |
20218 | Thermoplasma volcanium partial 16S rRNA gene, strain GSS1 | AJ299215 | 1411 | ena | 50339 |
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Thermoplasma volcanium GSS1 | GCA_000011185 | complete | ncbi | 273116 |
66792 | Thermoplasma volcanium GSS1 | 638154522 | complete | img | 273116 |
66792 | Thermoplasma volcanium GSS1 | 273116.8 | complete | patric | 273116 |
GC content
@ref | GC-content | method |
---|---|---|
1643 | 38.0 | |
67770 | 38 | thermal denaturation, midpoint method (Tm) |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
motile | no | 86.308 | no |
flagellated | no | 98.098 | no |
gram-positive | no | 94.44 | no |
anaerobic | yes | 82.087 | no |
halophile | no | 85.474 | no |
spore-forming | no | 94.185 | no |
thermophile | yes | 100 | yes |
glucose-util | yes | 86.611 | no |
aerobic | no | 91.6 | no |
glucose-ferment | no | 68.215 | no |
External links
@ref: 1643
culture collection no.: DSM 4299, ATCC 51530, JCM 9571, IFO 15438, NBRC 15438
straininfo link
- @ref: 86019
- straininfo: 46417
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
1643 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 4299) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-4299 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
86019 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID46417.1 | StrainInfo: A central database for resolving microbial strain identifiers |