Strain identifier

BacDive ID: 17018

Type strain: Yes

Species: Thermoplasma volcanium

Strain Designation: GSS 1, GSS1

Strain history: IFO 15438 <-- DSM 4299 <-- A. Segerer and K. O. Stetter GSS1.

NCBI tax ID(s): 50339 (species)

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General

@ref: 1643

BacDive-ID: 17018

DSM-Number: 4299

keywords: genome sequence, 16S sequence, Archaea, thermophilic

description: Thermoplasma volcanium GSS 1 is a thermophilic archaeon that was isolated from acid continental solfatara.

NCBI tax id

  • NCBI tax id: 50339
  • Matching level: species

strain history

@refhistory
1643<- A. Segerer and K.O. Stetter, GSS 1
67770IFO 15438 <-- DSM 4299 <-- A. Segerer and K. O. Stetter GSS1.

doi: 10.13145/bacdive17018.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/archaea
  • keyword: phylum/methanobacteriota
  • domain: Archaea
  • phylum: Methanobacteriota
  • class: Thermoplasmata
  • order: Thermoplasmatales
  • family: Thermoplasmataceae
  • genus: Thermoplasma
  • species: Thermoplasma volcanium
  • full scientific name: Thermoplasma volcanium Segerer et al. 1988

@ref: 1643

domain: Archaea

phylum: Euryarchaeota

class: Thermoplasmata

order: Thermoplasmatales

family: Thermoplasmataceae

genus: Thermoplasma

species: Thermoplasma volcanium

full scientific name: Thermoplasma volcanium Segerer et al. 1988

strain designation: GSS 1, GSS1

type strain: yes

Culture and growth conditions

culture medium

  • @ref: 1643
  • name: THERMOPLASMA VOLCANIUM MEDIUM (DSMZ Medium 398)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/398
  • composition: Name: THERMOPLASMA VOLCANIUM MEDIUM (DSMZ Medium 398) Composition: Glucose 5.0 g/l Sulfur 4.0 g/l KH2PO4 3.0 g/l Yeast extract 1.0 g/l MgSO4 x 7 H2O 1.0 g/l CaCl2 x 2 H2O 0.25 g/l (NH4)2SO4 0.2 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
1643positivegrowth60thermophilic
67770positivegrowth60thermophilic

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
1643acid continental solfataraVulcano islandItalyITAEurope
67770Solfatara, VulcanoPorto di LevanteItalyITAEurope

isolation source categories

Cat1Cat2Cat3
#Environmental#Terrestrial#Volcanic
#Condition#Acidic

Safety information

risk assessment

  • @ref: 1643
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Thermoplasma volcanium 16S ribosomal RNA gene, partial sequenceAF3397461402ena50339
20218Thermoplasma volcanium partial 16S rRNA gene, strain GSS1AJ2992151411ena50339

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Thermoplasma volcanium GSS1GCA_000011185completencbi273116
66792Thermoplasma volcanium GSS1638154522completeimg273116
66792Thermoplasma volcanium GSS1273116.8completepatric273116

GC content

@refGC-contentmethod
164338.0
6777038thermal denaturation, midpoint method (Tm)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileno86.308no
flagellatedno98.098no
gram-positiveno94.44no
anaerobicyes82.087no
halophileno85.474no
spore-formingno94.185no
thermophileyes100yes
glucose-utilyes86.611no
aerobicno91.6no
glucose-fermentno68.215no

External links

@ref: 1643

culture collection no.: DSM 4299, ATCC 51530, JCM 9571, IFO 15438, NBRC 15438

straininfo link

  • @ref: 86019
  • straininfo: 46417

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
1643Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 4299)https://www.dsmz.de/collection/catalogue/details/culture/DSM-4299
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
86019Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID46417.1StrainInfo: A central database for resolving microbial strain identifiers