Strain identifier
BacDive ID: 17013
Type strain:
Species: Actinoallomurus yoronensis
Strain Designation: TTN02-22
Strain history: <- T Tamura, NBRC, Japan
NCBI tax ID(s): 478110 (species)
General
@ref: 16839
BacDive-ID: 17013
DSM-Number: 45451
keywords: 16S sequence, Bacteria, aerobe, spore-forming, mesophilic, rod-shaped
description: Actinoallomurus yoronensis TTN02-22 is an aerobe, spore-forming, mesophilic bacterium that was isolated from forest soil.
NCBI tax id
- NCBI tax id: 478110
- Matching level: species
strain history
@ref | history |
---|---|
16839 | <- NBRC; NBRC 103686 <- T. Tamura; TTN02-22 |
67771 | <- T Tamura, NBRC, Japan |
doi: 10.13145/bacdive17013.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Streptosporangiales
- family: Thermomonosporaceae
- genus: Actinoallomurus
- species: Actinoallomurus yoronensis
- full scientific name: Actinoallomurus yoronensis Tamura et al. 2009
@ref: 16839
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Thermomonosporaceae
genus: Actinoallomurus
species: Actinoallomurus yoronensis
full scientific name: Actinoallomurus yoronensis Tamura et al. 2009
strain designation: TTN02-22
type strain: yes
Morphology
cell morphology
@ref | cell length | cell width | cell shape | motility | gram stain |
---|---|---|---|---|---|
29127 | 1.1 µm | 0.65 µm | rod-shaped | no | |
67771 | positive |
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
16839 | ISP2 MEDIUM (DSMZ Medium 987) | yes | https://mediadive.dsmz.de/medium/987 | Name: ISP 2 MEDIUM (DSMZ Medium 987) Composition: Agar 20.0 g/l Malt extract 10.0 g/l Dextrose 4.0 g/l Yeast extract 4.0 g/l Distilled water |
16839 | GPHF-MEDIUM (DSMZ Medium 553) | yes | https://mediadive.dsmz.de/medium/553 | Name: GPHF-MEDIUM (DSMZ Medium 553) Composition: Agar 20.0 g/l Glucose 10.0 g/l Beef extract 5.0 g/l Yeast extract 5.0 g/l Casein peptone 5.0 g/l CaCl2 x 2 H2O 0.74 g/l Distilled water |
16839 | GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) | yes | https://mediadive.dsmz.de/medium/65 | Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
16839 | positive | growth | 28 | mesophilic |
29127 | positive | growth | 15-37 | |
29127 | positive | optimum | 26 | mesophilic |
67771 | positive | growth | 28 | mesophilic |
culture pH
@ref | ability | type | pH |
---|---|---|---|
29127 | positive | growth | 05-06 |
29127 | positive | optimum | 5.5 |
Physiology and metabolism
oxygen tolerance
@ref | oxygen tolerance |
---|---|
29127 | aerobe |
67771 | aerobe |
spore formation
- @ref: 29127
- spore formation: yes
halophily
@ref | salt | growth | tested relation | concentration |
---|---|---|---|---|
29127 | NaCl | positive | growth | 0-1 % |
29127 | NaCl | positive | optimum | 0.5 % |
observation
- @ref: 29127
- observation: aggregates in chains
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
29127 | 16808 | 2-dehydro-D-gluconate | + | carbon source |
29127 | 58143 | 5-dehydro-D-gluconate | + | carbon source |
29127 | 22599 | arabinose | + | carbon source |
29127 | 18403 | L-arabitol | + | carbon source |
29127 | 17057 | cellobiose | + | carbon source |
29127 | 17234 | glucose | + | carbon source |
29127 | 17754 | glycerol | + | carbon source |
29127 | 28087 | glycogen | + | carbon source |
29127 | 17716 | lactose | + | carbon source |
29127 | 25017 | leucine | + | carbon source |
29127 | 17306 | maltose | + | carbon source |
29127 | 29864 | mannitol | + | carbon source |
29127 | 28053 | melibiose | + | carbon source |
29127 | 17268 | myo-inositol | + | carbon source |
29127 | 26546 | rhamnose | + | carbon source |
29127 | 33942 | ribose | + | carbon source |
29127 | 17814 | salicin | + | carbon source |
29127 | 30911 | sorbitol | + | carbon source |
29127 | 17992 | sucrose | + | carbon source |
29127 | 17151 | xylitol | + | carbon source |
29127 | 18222 | xylose | + | carbon source |
29127 | 4853 | esculin | + | hydrolysis |
enzymes
@ref | value | activity | ec |
---|---|---|---|
29127 | alkaline phosphatase | + | 3.1.3.1 |
29127 | catalase | + | 1.11.1.6 |
29127 | gelatinase | + | |
29127 | pyrazinamidase | + | 3.5.1.B15 |
29127 | urease | + | 3.5.1.5 |
Isolation, sampling and environmental information
isolation
@ref | sample type | geographic location | country | origin.country | continent |
---|---|---|---|---|---|
16839 | forest soil | Yoro Valley, Chiba | Japan | JPN | Asia |
67771 | From forest soil | Yoro Valley, Chiba | Japan | JPN | Asia |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Environmental | #Terrestrial | #Forest |
#Environmental | #Terrestrial | #Soil |
taxonmaps
- @ref: 69479
- File name: preview.99_67779.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_239;96_5383;97_10607;98_13006;99_67779&stattab=map
- Last taxonomy: Actinoallomurus
- 16S sequence: AB364584
- Sequence Identity:
- Total samples: 718
- soil counts: 694
- aquatic counts: 14
- animal counts: 10
Safety information
risk assessment
- @ref: 16839
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 16839
- description: Actinoallomurus yoronensis gene for 16S rRNA, partial sequence, strain: TTN02-22 (= NBRC 103686)
- accession: AB364584
- length: 1469
- database: ena
- NCBI tax ID: 478110
GC content
- @ref: 16839
- GC-content: 69
External links
@ref: 16839
culture collection no.: DSM 45451, KCTC 19540, NBRC 103686
straininfo link
- @ref: 86014
- straininfo: 404963
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 19567582 | Transfer of Actinomadura spadix Nonomura and Ohara 1971 to Actinoallomurus spadix gen. nov., comb. nov., and description of Actinoallomurus amamiensis sp. nov., Actinoallomurus caesius sp. nov., Actinoallomurus coprocola sp. nov., Actinoallomurus fulvus sp. nov., Actinoallomurus iriomotensis sp. nov., Actinoallomurus luridus sp. nov., Actinoallomurus purpureus sp. nov. and Actinoallomurus yoronensis sp. nov. | Tamura T, Ishida Y, Nozawa Y, Otoguro M, Suzuki K | Int J Syst Evol Microbiol | 10.1099/ijs.0.006858-0 | 2009 | Actinomycetales/chemistry/*classification/genetics/*isolation & purification, Amino Acids/analysis, Bacterial Typing Techniques, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Japan, Molecular Sequence Data, Peptidoglycan/chemistry, Phylogeny, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Spores, Bacterial/cytology | Genetics |
Phylogeny | 26033369 | Actinoallomurus bryophytorum sp. nov., an endophytic actinomycete isolated from moss (Bryophyta). | Li C, Wang H, Jin P, Zheng W, Chu L, Liu C, Li J, Xiang W, Wang X | Antonie Van Leeuwenhoek | 10.1007/s10482-015-0498-z | 2015 | Actinobacteria/*classification/genetics/*isolation & purification/physiology, Bacterial Typing Techniques, Bryophyta/*microbiology, Cell Wall/chemistry, China, Cluster Analysis, Cytosol/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Diaminopimelic Acid/analysis, Endophytes/*classification/genetics/*isolation & purification/physiology, Fatty Acids/analysis, Microscopy, Electron, Scanning, Molecular Sequence Data, Nucleic Acid Hybridization, Peptidoglycan/analysis, Phospholipids/analysis, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Spores, Bacterial/cytology, Vitamin K 2/analysis | Enzymology |
Reference
@id | authors | catalogue | doi/url | title | ID_cross_reference | pubmed |
---|---|---|---|---|---|---|
16839 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 45451) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-45451 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
29127 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | 10.1128/mSphere.00237-17 | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 25553 | 28776041 | |
67771 | Curators of the KCTC | https://kctc.kribb.re.kr/En/Kctc | ||||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
86014 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID404963.1 | StrainInfo: A central database for resolving microbial strain identifiers |