Strain identifier
BacDive ID: 17012
Type strain:
Species: Actinoallomurus purpureus
Strain Designation: TTN02-30
Strain history: <- T Tamura, NBRC, Japan
NCBI tax ID(s): 478114 (species)
General
@ref: 16838
BacDive-ID: 17012
DSM-Number: 45449
keywords: genome sequence, 16S sequence, Bacteria, aerobe, spore-forming, mesophilic, rod-shaped
description: Actinoallomurus purpureus TTN02-30 is an aerobe, spore-forming, mesophilic bacterium that was isolated from forest soil.
NCBI tax id
- NCBI tax id: 478114
- Matching level: species
strain history
@ref | history |
---|---|
16838 | <- NBRC; NBRC 103687 <- T. Tamura; TTN02-30 |
67771 | <- T Tamura, NBRC, Japan |
doi: 10.13145/bacdive17012.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Streptosporangiales
- family: Thermomonosporaceae
- genus: Actinoallomurus
- species: Actinoallomurus purpureus
- full scientific name: Actinoallomurus purpureus Tamura et al. 2009
@ref: 16838
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Thermomonosporaceae
genus: Actinoallomurus
species: Actinoallomurus purpureus
full scientific name: Actinoallomurus purpureus Tamura et al. 2009
strain designation: TTN02-30
type strain: yes
Morphology
cell morphology
@ref | cell length | cell width | cell shape | motility | gram stain |
---|---|---|---|---|---|
29127 | 1.1 µm | 0.75 µm | rod-shaped | no | |
67771 | positive |
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
16838 | GPHF-MEDIUM (DSMZ Medium 553) | yes | https://mediadive.dsmz.de/medium/553 | Name: GPHF-MEDIUM (DSMZ Medium 553) Composition: Agar 20.0 g/l Glucose 10.0 g/l Beef extract 5.0 g/l Yeast extract 5.0 g/l Casein peptone 5.0 g/l CaCl2 x 2 H2O 0.74 g/l Distilled water |
16838 | STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252) | yes | https://mediadive.dsmz.de/medium/252 | Name: STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252) Composition: Agar 14.985 g/l Starch 9.99001 g/l (NH4)2SO4 1.998 g/l CaCO3 1.998 g/l K2HPO4 0.999001 g/l MgSO4 x 7 H2O 0.999001 g/l NaCl 0.999001 g/l FeSO4 x 7 H2O 0.000999001 g/l MnCl2 x 4 H2O 0.000999001 g/l ZnSO4 x 7 H2O 0.000999001 g/l Distilled water |
16838 | GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) | yes | https://mediadive.dsmz.de/medium/65 | Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water |
16838 | ISP2 MEDIUM (DSMZ Medium 987) | yes | https://mediadive.dsmz.de/medium/987 | Name: ISP 2 MEDIUM (DSMZ Medium 987) Composition: Agar 20.0 g/l Malt extract 10.0 g/l Dextrose 4.0 g/l Yeast extract 4.0 g/l Distilled water |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
16838 | positive | growth | 28 | mesophilic |
29127 | positive | growth | 15-30 | |
29127 | positive | optimum | 22.5 | psychrophilic |
67771 | positive | growth | 28 | mesophilic |
culture pH
@ref | ability | type | pH |
---|---|---|---|
29127 | positive | growth | 05-07 |
29127 | positive | optimum | 6 |
Physiology and metabolism
oxygen tolerance
@ref | oxygen tolerance |
---|---|
29127 | aerobe |
67771 | aerobe |
spore formation
- @ref: 29127
- spore formation: yes
halophily
@ref | salt | growth | tested relation | concentration |
---|---|---|---|---|
29127 | NaCl | positive | growth | 0-5 % |
29127 | NaCl | positive | optimum | 2.5 % |
observation
- @ref: 29127
- observation: aggregates in chains
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
29127 | 17057 | cellobiose | + | carbon source |
29127 | 28757 | fructose | + | carbon source |
29127 | 33984 | fucose | + | carbon source |
29127 | 28260 | galactose | + | carbon source |
29127 | 5417 | glucosamine | + | carbon source |
29127 | 17234 | glucose | + | carbon source |
29127 | 17754 | glycerol | + | carbon source |
29127 | 28087 | glycogen | + | carbon source |
29127 | 17716 | lactose | + | carbon source |
29127 | 17306 | maltose | + | carbon source |
29127 | 37684 | mannose | + | carbon source |
29127 | 506227 | N-acetylglucosamine | + | carbon source |
29127 | 17814 | salicin | + | carbon source |
29127 | 17992 | sucrose | + | carbon source |
29127 | 27082 | trehalose | + | carbon source |
29127 | 4853 | esculin | + | hydrolysis |
enzymes
@ref | value | activity | ec |
---|---|---|---|
29127 | catalase | + | 1.11.1.6 |
29127 | gelatinase | + | |
29127 | pyrazinamidase | + | 3.5.1.B15 |
Isolation, sampling and environmental information
isolation
@ref | sample type | geographic location | country | origin.country | continent |
---|---|---|---|---|---|
16838 | forest soil | Yoro Valley, Chiba | Japan | JPN | Asia |
67771 | From forest soil | Yoro Valley, Chiba | Japan | JPN | Asia |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Environmental | #Terrestrial | #Forest |
#Environmental | #Terrestrial | #Soil |
taxonmaps
- @ref: 69479
- File name: preview.99_67780.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_239;96_5383;97_6498;98_8091;99_67780&stattab=map
- Last taxonomy: Actinoallomurus purpureus
- 16S sequence: AB364588
- Sequence Identity:
- Total samples: 118
- soil counts: 90
- aquatic counts: 5
- animal counts: 1
- plant counts: 22
Safety information
risk assessment
- @ref: 16838
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 16838
- description: Actinoallomurus purpureus gene for 16S rRNA, partial sequence, strain: TTN02-30 (= NBRC 103687)
- accession: AB364588
- length: 1454
- database: ena
- NCBI tax ID: 478114
Genome sequences
- @ref: 66792
- description: Actinoallomurus purpureus KCTC 19541
- accession: GCA_024055795
- assembly level: contig
- database: ncbi
- NCBI tax ID: 478114
GC content
- @ref: 16838
- GC-content: 70
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
flagellated | no | 98.732 | no |
gram-positive | yes | 89.518 | yes |
anaerobic | no | 98.189 | yes |
aerobic | yes | 89.607 | yes |
halophile | no | 91.362 | no |
spore-forming | yes | 93.06 | yes |
motile | no | 93.772 | yes |
glucose-ferment | no | 87.942 | no |
thermophile | no | 95.698 | yes |
glucose-util | yes | 89.177 | no |
External links
@ref: 16838
culture collection no.: DSM 45449, KCTC 19541, NBRC 103687
straininfo link
- @ref: 86013
- straininfo: 402895
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 19567582 | Transfer of Actinomadura spadix Nonomura and Ohara 1971 to Actinoallomurus spadix gen. nov., comb. nov., and description of Actinoallomurus amamiensis sp. nov., Actinoallomurus caesius sp. nov., Actinoallomurus coprocola sp. nov., Actinoallomurus fulvus sp. nov., Actinoallomurus iriomotensis sp. nov., Actinoallomurus luridus sp. nov., Actinoallomurus purpureus sp. nov. and Actinoallomurus yoronensis sp. nov. | Tamura T, Ishida Y, Nozawa Y, Otoguro M, Suzuki K | Int J Syst Evol Microbiol | 10.1099/ijs.0.006858-0 | 2009 | Actinomycetales/chemistry/*classification/genetics/*isolation & purification, Amino Acids/analysis, Bacterial Typing Techniques, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Japan, Molecular Sequence Data, Peptidoglycan/chemistry, Phylogeny, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Spores, Bacterial/cytology | Genetics |
Phylogeny | 23002049 | Actinoallomurus acanthiterrae sp. nov., an actinomycete isolated from rhizosphere soil of the mangrove plant Acanthus ilicifolius. | Tang YL, Lin HP, Xie QY, Li L, Peng F, Deng Z, Hong K | Int J Syst Evol Microbiol | 10.1099/ijs.0.043380-0 | 2012 | Acanthaceae/*microbiology, Actinomycetales/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Diaminopimelic Acid/analysis, Fatty Acids/analysis, Molecular Sequence Data, Nucleic Acid Hybridization, Peptidoglycan, Phospholipids/analysis, *Phylogeny, Plant Roots/microbiology, RNA, Ribosomal, 16S/genetics, *Rhizosphere, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/analogs & derivatives/analysis | Genetics |
Reference
@id | authors | catalogue | doi/url | title | ID_cross_reference | pubmed |
---|---|---|---|---|---|---|
16838 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 45449) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-45449 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
29127 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | 10.1128/mSphere.00237-17 | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 25553 | 28776041 | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
67771 | Curators of the KCTC | https://kctc.kribb.re.kr/En/Kctc | ||||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
86013 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID402895.1 | StrainInfo: A central database for resolving microbial strain identifiers |