Strain identifier

BacDive ID: 17011

Type strain: Yes

Species: Actinoallomurus luridus

Strain Designation: TT02-15

Strain history: <- T Tamura, NBRC, Japan

NCBI tax ID(s): 478111 (species)

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General

@ref: 16840

BacDive-ID: 17011

DSM-Number: 45452

keywords: 16S sequence, Bacteria, aerobe, spore-forming, mesophilic, rod-shaped

description: Actinoallomurus luridus TT02-15 is an aerobe, spore-forming, mesophilic bacterium that was isolated from meadow soil.

NCBI tax id

  • NCBI tax id: 478111
  • Matching level: species

strain history

@refhistory
16840<- NBRC; NBRC 103683 <- T. Tamura; TT02-15
67771<- T Tamura, NBRC, Japan

doi: 10.13145/bacdive17011.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Streptosporangiales
  • family: Thermomonosporaceae
  • genus: Actinoallomurus
  • species: Actinoallomurus luridus
  • full scientific name: Actinoallomurus luridus Tamura et al. 2009

@ref: 16840

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Thermomonosporaceae

genus: Actinoallomurus

species: Actinoallomurus luridus

full scientific name: Actinoallomurus luridus Tamura et al. 2009

strain designation: TT02-15

type strain: yes

Morphology

cell morphology

@refcell lengthcell widthcell shapemotilitygram stain
291271.1 µm0.75 µmrod-shapedno
67771positive

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
16840ISP2 MEDIUM (DSMZ Medium 987)yeshttps://mediadive.dsmz.de/medium/987Name: ISP 2 MEDIUM (DSMZ Medium 987) Composition: Agar 20.0 g/l Malt extract 10.0 g/l Dextrose 4.0 g/l Yeast extract 4.0 g/l Distilled water
16840GPHF-MEDIUM (DSMZ Medium 553)yeshttps://mediadive.dsmz.de/medium/553Name: GPHF-MEDIUM (DSMZ Medium 553) Composition: Agar 20.0 g/l Glucose 10.0 g/l Beef extract 5.0 g/l Yeast extract 5.0 g/l Casein peptone 5.0 g/l CaCl2 x 2 H2O 0.74 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
16840positivegrowth28mesophilic
29127positivegrowth20-45
29127positiveoptimum32.5mesophilic
67771positivegrowth28mesophilic

culture pH

@refabilitytypepH
29127positivegrowth05-07
29127positiveoptimum6

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
29127aerobe
67771aerobe

spore formation

  • @ref: 29127
  • spore formation: yes

halophily

@refsaltgrowthtested relationconcentration
29127NaClpositivegrowth0-2 %
29127NaClpositiveoptimum1 %

observation

  • @ref: 29127
  • observation: aggregates in chains

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
29127168082-dehydro-D-gluconate+carbon source
29127581435-dehydro-D-gluconate+carbon source
2912717057cellobiose+carbon source
2912717754glycerol+carbon source
2912728087glycogen+carbon source
2912717716lactose+carbon source
2912725017leucine+carbon source
2912717306maltose+carbon source
2912728053melibiose+carbon source
2912726546rhamnose+carbon source
2912733942ribose+carbon source
2912717814salicin+carbon source
2912717992sucrose+carbon source
291274853esculin+hydrolysis

enzymes

@refvalueactivityec
29127alkaline phosphatase+3.1.3.1
29127gelatinase+
29127pyrazinamidase+3.5.1.B15

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
16840meadow soilIromote Island, OkinawaJapanJPNAsia
67771From meadow soilIriomote Island, OkinawaJapanJPNAsia

isolation source categories

Cat1Cat2Cat3
#Engineered#Agriculture#Meadow
#Environmental#Terrestrial#Soil

taxonmaps

  • @ref: 69479
  • File name: preview.99_39291.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_239;96_5383;97_6498;98_28761;99_39291&stattab=map
  • Last taxonomy: Actinoallomurus
  • 16S sequence: AB364585
  • Sequence Identity:
  • Total samples: 513
  • soil counts: 455
  • aquatic counts: 3
  • animal counts: 17
  • plant counts: 38

Safety information

risk assessment

  • @ref: 16840
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 16840
  • description: Actinoallomurus luridus gene for 16S rRNA, partial sequence, strain: TT02-15 (= NBRC 103683)
  • accession: AB364585
  • length: 1455
  • database: ena
  • NCBI tax ID: 478111

GC content

  • @ref: 16840
  • GC-content: 72

External links

@ref: 16840

culture collection no.: DSM 45452, KCTC 19538, NBRC 103683

straininfo link

  • @ref: 86012
  • straininfo: 399106

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny19567582Transfer of Actinomadura spadix Nonomura and Ohara 1971 to Actinoallomurus spadix gen. nov., comb. nov., and description of Actinoallomurus amamiensis sp. nov., Actinoallomurus caesius sp. nov., Actinoallomurus coprocola sp. nov., Actinoallomurus fulvus sp. nov., Actinoallomurus iriomotensis sp. nov., Actinoallomurus luridus sp. nov., Actinoallomurus purpureus sp. nov. and Actinoallomurus yoronensis sp. nov.Tamura T, Ishida Y, Nozawa Y, Otoguro M, Suzuki KInt J Syst Evol Microbiol10.1099/ijs.0.006858-02009Actinomycetales/chemistry/*classification/genetics/*isolation & purification, Amino Acids/analysis, Bacterial Typing Techniques, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Japan, Molecular Sequence Data, Peptidoglycan/chemistry, Phylogeny, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Spores, Bacterial/cytologyGenetics
Phylogeny23002049Actinoallomurus acanthiterrae sp. nov., an actinomycete isolated from rhizosphere soil of the mangrove plant Acanthus ilicifolius.Tang YL, Lin HP, Xie QY, Li L, Peng F, Deng Z, Hong KInt J Syst Evol Microbiol10.1099/ijs.0.043380-02012Acanthaceae/*microbiology, Actinomycetales/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Diaminopimelic Acid/analysis, Fatty Acids/analysis, Molecular Sequence Data, Nucleic Acid Hybridization, Peptidoglycan, Phospholipids/analysis, *Phylogeny, Plant Roots/microbiology, RNA, Ribosomal, 16S/genetics, *Rhizosphere, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/analogs & derivatives/analysisGenetics

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmed
16840Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 45452)https://www.dsmz.de/collection/catalogue/details/culture/DSM-45452
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
29127Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2555328776041
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
86012Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID399106.1StrainInfo: A central database for resolving microbial strain identifiers