Strain identifier
BacDive ID: 17009
Type strain: 
Species: Actinoallomurus fulvus
Strain Designation: TT99-66
Strain history: <- T Tamura, NBRC, Japan
NCBI tax ID(s): 478108 (species)
version 9.2 (current version)
General
@ref: 16836
BacDive-ID: 17009
DSM-Number: 45446
keywords: 16S sequence, Bacteria, aerobe, mesophilic, Gram-positive
description: Actinoallomurus fulvus TT99-66 is an aerobe, mesophilic, Gram-positive bacterium that was isolated from soil of a sugar-cane field.
NCBI tax id
- NCBI tax id: 478108
- Matching level: species
strain history
| @ref | history |
|---|---|
| 16836 | <- NBRC; NBRC 103680 <- T. Tamura; TT99-66 |
| 67771 | <- T Tamura, NBRC, Japan |
doi: 10.13145/bacdive17009.20241212.9.2
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Streptosporangiales
- family: Thermomonosporaceae
- genus: Actinoallomurus
- species: Actinoallomurus fulvus
- full scientific name: Actinoallomurus fulvus Tamura et al. 2009
@ref: 16836
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Thermomonosporaceae
genus: Actinoallomurus
species: Actinoallomurus fulvus
full scientific name: Actinoallomurus fulvus Tamura et al. 2009
strain designation: TT99-66
type strain: yes
Morphology
cell morphology
- @ref: 67771
- gram stain: positive
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 16836 | GPHF-MEDIUM (DSMZ Medium 553) | yes | https://mediadive.dsmz.de/medium/553 | Name: GPHF-MEDIUM (DSMZ Medium 553) Composition: Agar 20.0 g/l Glucose 10.0 g/l Beef extract 5.0 g/l Yeast extract 5.0 g/l Casein peptone 5.0 g/l CaCl2 x 2 H2O 0.74 g/l Distilled water |
| 16836 | GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) | yes | https://mediadive.dsmz.de/medium/65 | Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water |
| 16836 | ISP2 MEDIUM (DSMZ Medium 987) | yes | https://mediadive.dsmz.de/medium/987 | Name: ISP 2 MEDIUM (DSMZ Medium 987) Composition: Agar 20.0 g/l Malt extract 10.0 g/l Dextrose 4.0 g/l Yeast extract 4.0 g/l Distilled water |
culture temp
| @ref | growth | type | temperature |
|---|---|---|---|
| 16836 | positive | growth | 28 |
| 67771 | positive | growth | 28 |
Physiology and metabolism
oxygen tolerance
- @ref: 67771
- oxygen tolerance: aerobe
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 16836 | soil of a sugar-cane field | Iromote Island, Okinawa | Japan | JPN | Asia |
| 67771 | From sugarcane field soil | Iriomote Island, Okinawa | Japan | JPN | Asia |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Engineered | #Agriculture | #Field |
| #Environmental | #Terrestrial | #Soil |
| #Host | #Plants | #Herbaceous plants (Grass,Crops) |
Safety information
risk assessment
- @ref: 16836
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 16836
- description: Actinoallomurus fulvus gene for 16S rRNA, partial sequence, strain: TT99-66 (= NBRC 103680)
- accession: AB364582
- length: 1471
- database: nuccore
- NCBI tax ID: 478108
GC content
- @ref: 16836
- GC-content: 72
External links
@ref: 16836
culture collection no.: DSM 45446, KCTC 19536, NBRC 103680
straininfo link
- @ref: 86010
- straininfo: 399434
literature
- topic: Phylogeny
- Pubmed-ID: 19567582
- title: Transfer of Actinomadura spadix Nonomura and Ohara 1971 to Actinoallomurus spadix gen. nov., comb. nov., and description of Actinoallomurus amamiensis sp. nov., Actinoallomurus caesius sp. nov., Actinoallomurus coprocola sp. nov., Actinoallomurus fulvus sp. nov., Actinoallomurus iriomotensis sp. nov., Actinoallomurus luridus sp. nov., Actinoallomurus purpureus sp. nov. and Actinoallomurus yoronensis sp. nov.
- authors: Tamura T, Ishida Y, Nozawa Y, Otoguro M, Suzuki K
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.006858-0
- year: 2009
- mesh: Actinomycetales/chemistry/*classification/genetics/*isolation & purification, Amino Acids/analysis, Bacterial Typing Techniques, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Japan, Molecular Sequence Data, Peptidoglycan/chemistry, Phylogeny, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Spores, Bacterial/cytology
- topic2: Genetics
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 16836 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 45446) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-45446 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 67771 | Curators of the KCTC | https://kctc.kribb.re.kr/En/Kctc | ||
| 86010 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID399434.1 | StrainInfo: A central database for resolving microbial strain identifiers |