Strain identifier
BacDive ID: 170015
Type strain: 
Species: Lysobacter selenitireducens
Strain Designation: 13A
NCBI tax ID(s): 2872639 (species)
version 9.3 (current version)
General
@ref: 20215
BacDive-ID: 170015
keywords: genome sequence, 16S sequence, Bacteria, Gram-negative
description: Lysobacter selenitireducens 13A is a Gram-negative bacterium of the family Lysobacteraceae.
NCBI tax id
- NCBI tax id: 2872639
- Matching level: species
doi: 10.13145/bacdive170015.20250331.9.3
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Lysobacterales
- family: Lysobacteraceae
- genus: Lysobacter
- species: Lysobacter selenitireducens
- full scientific name: Lysobacter selenitireducens Mao et al. 2022
synonyms
- @ref: 20215
- synonym: Novilysobacter selenitireducens
@ref: 20215
domain: Bacteria
phylum: Pseudomonadota
class: Gammaproteobacteria
order: Lysobacterales
family: Lysobacteraceae
genus: Lysobacter
species: Lysobacter selenitireducens
full scientific name: Lysobacter selenitireducens Mao et al. 2022
strain designation: 13A
type strain: yes
Morphology
cell morphology
| @ref | gram stain | confidence |
|---|---|---|
| 125438 | negative | 99.23 |
| 125439 | negative | 96.5 |
Physiology and metabolism
oxygen tolerance
- @ref: 125439
- oxygen tolerance: obligate aerobe
- confidence: 99.2
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 125439 | no | 94.3 |
| 125438 | no | 91.376 |
Sequence information
16S sequences
- @ref: 20215
- description: Lysobacter selenitireducens strain 13A 16S ribosomal RNA gene, partial sequence
- accession: MZ643208
- length: 1467
- database: nuccore
- NCBI tax ID: 2872639
Genome sequences
- @ref: 66792
- description: Lysobacter selenitireducens 13A
- accession: GCA_020026895
- assembly level: contig
- database: ncbi
- NCBI tax ID: 2872639
Genome-based predictions
predictions
| @ref | model | trait | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positive | Positive reaction to Gram-staining | no | 99.23 | no |
| 125438 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 98.495 | no |
| 125438 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 84.182 | no |
| 125438 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 91.376 | no |
| 125438 | thermophile | thermophilic | Ability to grow at temperatures above or equal to 45°C | no | 89.899 | no |
| 125438 | motile2+ | flagellated | Ability to perform flagellated movement | no | 53.231 | no |
| 125439 | BacteriaNet | spore_formation | Ability to form endo- or exospores | no | 94.3 | |
| 125439 | BacteriaNet | motility | Ability to perform movement | yes | 74.8 | |
| 125439 | BacteriaNet | gram_stain | Reaction to gram-staining | negative | 96.5 | |
| 125439 | BacteriaNet | oxygen_tolerance | Oxygenic conditions needed for growth | obligate aerobe | 99.2 |
External links
@ref: 20215
culture collection no.: JCM 34786, GDMCC 1.2722
literature
- topic: Phylogeny
- Pubmed-ID: 36260505
- title: Lysobacter selenitireducens sp. nov., isolated from river sediment.
- authors: Mao S, Li S, Guo B, Mu W, Hou X, Liu H, Wei S, Liu A, Kong L, Chen Z
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijsem.0.005550
- year: 2022
- mesh: *Lysobacter/genetics, RNA, Ribosomal, 16S/genetics, Ubiquinone/chemistry, Phylogeny, Phosphatidylethanolamines/metabolism, Base Composition, Rivers, Sodium Chloride, Cardiolipins, Soil Microbiology, *DNA, Bacterial/genetics, Fatty Acids/chemistry, Bacterial Typing Techniques, Sequence Analysis, DNA, Phospholipids/chemistry, Glycolipids/analysis, Amino Acids/metabolism, Nucleotides
- topic2: Metabolism
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
| 125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann | Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets | 10.1101/2024.08.12.607695 |
| 125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy | deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 | https://github.com/GenomeNet/deepG |