Strain identifier
BacDive ID: 16981
Type strain: 
Species: Actinomadura latina
Strain Designation: 1065, A 10
Strain history: DSM 43382 <-- M. Goodfellow A10 <-- C. Philpot 1065 <-- E. C. Smith.
NCBI tax ID(s): 1220563 (strain), 163603 (species)
version 8.1 (current version)
General
@ref: 10999
BacDive-ID: 16981
DSM-Number: 43382
keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic
description: Actinomadura latina 1065 is an aerobe, mesophilic bacterium that was isolated from arm of patient.
NCBI tax id
| NCBI tax id | Matching level |
|---|---|
| 1220563 | strain |
| 163603 | species |
strain history
| @ref | history |
|---|---|
| 10999 | <- M. Goodfellow, A 10, (Actinomadura pelletieri) <- C. Philpot, 1065, London School of Hygiene and Tropical Medicine <- E.C. Smith |
| 67770 | DSM 43382 <-- M. Goodfellow A10 <-- C. Philpot 1065 <-- E. C. Smith. |
doi: 10.13145/bacdive16981.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Streptosporangiales
- family: Thermomonosporaceae
- genus: Actinomadura
- species: Actinomadura latina
- full scientific name: Actinomadura latina Trujillo and Goodfellow 1997
@ref: 10999
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Thermomonosporaceae
genus: Actinomadura
species: Actinomadura latina
full scientific name: Actinomadura latina Trujillo and Goodfellow 1997
strain designation: 1065, A 10
type strain: yes
Culture and growth conditions
culture medium
- @ref: 10999
- name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)
- growth: yes
- link: https://mediadive.dsmz.de/medium/65
- composition: Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 10999 | positive | growth | 28 | mesophilic |
| 58070 | positive | growth | 28 | mesophilic |
| 67770 | positive | growth | 28 | mesophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 58070
- oxygen tolerance: aerobe
observation
- @ref: 67770
- observation: quinones: MK-9(H6), MK-9(H8), MK-9(H4)
Isolation, sampling and environmental information
isolation
| @ref | sample type | country | origin.country | continent |
|---|---|---|---|---|
| 10999 | arm of patient | |||
| 67770 | Mycetoma of the arm | Nigeria | NGA | Africa |
isolation source categories
- Cat1: #Infection
- Cat2: #Patient
Safety information
risk assessment
- @ref: 10999
- biosafety level: 2
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 20218
- description: Actinomadura latina 16S ribosomal RNA gene, partial sequence
- accession: AY035998
- length: 1452
- database: ena
- NCBI tax ID: 163603
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Actinomadura latina NBRC 106108 | 1220563.3 | wgs | patric | 1220563 |
| 66792 | Actinomadura latina NBRC 106108 | 2731957574 | draft | img | 1220563 |
| 67770 | Actinomadura latina NBRC 106108 | GCA_001552195 | contig | ncbi | 1220563 |
| 67770 | Actinomadura latina ATCC BAA-277 | GCA_012396395 | contig | ncbi | 163603 |
GC content
| @ref | GC-content |
|---|---|
| 10999 | 67 |
| 67770 | 67.3 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | no | 91.396 | no |
| gram-positive | yes | 91.443 | no |
| anaerobic | no | 98.316 | yes |
| aerobic | yes | 85.201 | yes |
| halophile | no | 88.473 | no |
| spore-forming | yes | 92.824 | no |
| glucose-util | yes | 88.032 | no |
| flagellated | no | 98.113 | no |
| thermophile | no | 93.983 | yes |
| glucose-ferment | no | 93.141 | no |
External links
@ref: 10999
culture collection no.: DSM 43382, ATCC BAA 277, JCM 10674, CCUG 48293, IFM 0961, NBRC 106108
straininfo link
- @ref: 85985
- straininfo: 50261
literature
- topic: Pathogenicity
- Pubmed-ID: 9060154
- title: Polyphasic taxonomic study of clinically significant actinomadurae including the description of Actinomadura latina sp.nov.
- authors: Trujillo ME, Goodfellow M
- journal: Zentralbl Bakteriol
- DOI: 10.1016/s0934-8840(97)80029-1
- year: 1997
- mesh: Actinomycetales/*classification, DNA, Bacterial/analysis, Gene Amplification, Humans, Mass Spectrometry
- topic2: Phylogeny
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 10999 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 43382) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-43382 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 58070 | Curators of the CCUG | Culture Collection University of Gothenburg (CCUG) (CCUG 48293) | https://www.ccug.se/strain?id=48293 | |||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 85985 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID50261.1 | StrainInfo: A central database for resolving microbial strain identifiers |