Strain identifier
BacDive ID: 169570
Type strain: 
Species: Parabacteroides goldsteinii
Strain Designation: Cla-AP-3
NCBI tax ID(s): 328812 (species)
version 9.3 (current version)
General
@ref: 68876
BacDive-ID: 169570
DSM-Number: 111136
keywords: 16S sequence, Bacteria, mesophilic
description: Parabacteroides goldsteinii Cla-AP-3 is a mesophilic bacterium that was isolated from gut content; SPF, neonate mouse.
NCBI tax id
- NCBI tax id: 328812
- Matching level: species
doi: 10.13145/bacdive169570.20250331.9.3
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacteroidota
- domain: Bacteria
- phylum: Bacteroidota
- class: Bacteroidia
- order: Bacteroidales
- family: Tannerellaceae
- genus: Parabacteroides
- species: Parabacteroides goldsteinii
- full scientific name: Parabacteroides goldsteinii (Song et al. 2006) Sakamoto and Benno 2006
synonyms
- @ref: 20215
- synonym: Bacteroides goldsteinii
@ref: 68876
domain: Bacteria
phylum: Bacteroidetes
class: Bacteroidia
order: Bacteroidales
family: Tannerellaceae
genus: Parabacteroides
species: Parabacteroides goldsteinii
full scientific name: Parabacteroides goldsteinii (Song et al. 2006) Sakamoto and Benno 2006
strain designation: Cla-AP-3
type strain: no
Culture and growth conditions
culture medium
| @ref | name | growth | link |
|---|---|---|---|
| 68876 | COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) | yes | https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium693.pdf |
| 68876 | GAM Broth (Gifu Anaerobic Medium Broth) (DSMZ Medium 1713) | yes | https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium1713.pdf |
culture temp
- @ref: 68876
- growth: positive
- type: growth
- temperature: 37
Physiology and metabolism
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 68380 | 27897 | tryptophan | - | energy source |
| 68380 | 17632 | nitrate | - | reduction |
| 68380 | 29985 | L-glutamate | + | degradation |
| 68380 | 16634 | raffinose | + | fermentation |
| 68380 | 16024 | D-mannose | + | fermentation |
| 68380 | 29016 | arginine | - | hydrolysis |
| 68380 | 16199 | urea | - | hydrolysis |
metabolite production
- @ref: 68380
- Chebi-ID: 35581
- metabolite: indole
- production: no
metabolite tests
- @ref: 68380
- Chebi-ID: 35581
- metabolite: indole
- indole test: -
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 68380 | serine arylamidase | + | |
| 68380 | glycin arylamidase | + | |
| 68380 | alanine arylamidase | + | 3.4.11.2 |
| 68380 | tyrosine arylamidase | + | |
| 68380 | pyrrolidonyl arylamidase | + | 3.4.19.3 |
| 68380 | phenylalanine arylamidase | + | |
| 68380 | proline-arylamidase | - | 3.4.11.5 |
| 68380 | leucyl glycin arylamidase | + | 3.4.11.1 |
| 68380 | alkaline phosphatase | + | 3.1.3.1 |
| 68380 | L-arginine arylamidase | + | |
| 68380 | tryptophan deaminase | - | 4.1.99.1 |
| 68380 | alpha-fucosidase | - | 3.2.1.51 |
| 68380 | glutamate decarboxylase | + | 4.1.1.15 |
| 68380 | alpha-arabinosidase | - | 3.2.1.55 |
| 68380 | beta-glucosidase | + | 3.2.1.21 |
| 68380 | alpha-glucosidase | + | 3.2.1.20 |
| 68380 | beta-Galactosidase 6-phosphate | - | |
| 68380 | alpha-galactosidase | + | 3.2.1.22 |
| 68380 | arginine dihydrolase | - | 3.5.3.6 |
| 68380 | urease | - | 3.5.1.5 |
| 68380 | glutamyl-glutamate arylamidase | + | |
| 68380 | histidine arylamidase | + | |
| 68380 | leucine arylamidase | + | 3.4.11.1 |
| 68380 | N-acetyl-beta-glucosaminidase | + | 3.2.1.52 |
| 68380 | beta-glucuronidase | - | 3.2.1.31 |
| 68380 | beta-galactosidase | + | 3.2.1.23 |
API rID32A
| @ref | URE | ADH Arg | alpha GAL | beta GAL | beta GP | alpha GLU | beta GLU | alpha ARA | beta GUR | beta NAG | MNE | RAF | GDC | alpha FUC | NIT | IND | PAL | ArgA | ProA | LGA | PheA | LeuA | PyrA | TyrA | AlaA | GlyA | HisA | GGA | SerA |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 68876 | - | - | + | + | - | + | + | - | - | + | + | + | + | - | - | - | + | + | - | + | + | + | + | + | + | + | + | + | + |
Isolation, sampling and environmental information
isolation
- @ref: 68876
- sample type: gut content; SPF, neonate mouse
- geographic location: Aachen
- country: Germany
- origin.country: DEU
- continent: Europe
Safety information
risk assessment
- @ref: 68876
- biosafety level: 2
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 124043
- description: Parabacteroides goldsteinii strain DSM 111136 16S ribosomal RNA gene, partial sequence.
- accession: OM658614
- length: 1467
- database: nuccore
- NCBI tax ID: 328812
External links
@ref: 68876
culture collection no.: DSM 111136
straininfo link
- @ref: 115766
- straininfo: 404322
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 68380 | Automatically annotated from API rID32A | |||
| 68876 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-111136 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 111136) | |
| 115766 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID404322.1 | |
| 124043 | Isabel Schober, Julia Koblitz | Data extracted from sequence databases, automatically matched based on designation and taxonomy |