Strain identifier
BacDive ID: 169505
Type strain: 
Species: Fructobacillus cardui
Strain Designation: M131
Strain history: <- M. Gallus, Technical University of Munich; M131
NCBI tax ID(s): 2893170 (species)
version 9.1 (current version)
General
@ref: 68799
BacDive-ID: 169505
DSM-Number: 113480
keywords: genome sequence, Bacteria, Gram-positive
description: Fructobacillus cardui M131 is a Gram-positive bacterium that was isolated from flower, Carduus nutans.
NCBI tax id
- NCBI tax id: 2893170
- Matching level: species
strain history
- @ref: 68799
- history: <- M. Gallus, Technical University of Munich; M131
doi: 10.13145/bacdive169505.20240916.9.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Lactobacillales
- family: Lactobacillaceae
- genus: Fructobacillus
- species: Fructobacillus cardui
- full scientific name: Fructobacillus cardui Gallus et al. 2022
@ref: 68799
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Not assigned to order
family: Leuconostocaceae
genus: Fructobacillus
species: Fructobacillus cardui
full scientific name: Fructobacillus cardui Gallus et al. 2022
strain designation: M131
type strain: yes
Morphology
cell morphology
| @ref | gram stain | confidence | motility |
|---|---|---|---|
| 69480 | positive | 92.145 | |
| 69480 | 94.5 | no |
Culture and growth conditions
culture medium
- @ref: 68799
- name: PEDIOCOCCUS DAMNOSUS MEDIUM (DSMZ Medium 231)
- growth: yes
- link: https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium231.pdf
culture temp
- @ref: 68799
- growth: positive
- type: growth
- temperature: 30
Isolation, sampling and environmental information
isolation
- @ref: 68799
- sample type: flower, Carduus nutans
- geographic location: Bavaria
- country: Germany
- origin.country: DEU
- continent: Europe
Sequence information
Genome sequences
- @ref: 66792
- description: Fructobacillus cardui TMW 2.2452
- accession: GCA_023218935
- assembly level: contig
- database: ncbi
- NCBI tax ID: 2893170
Genome-based predictions
predictions
| @ref | trait | model | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 92.145 | no |
| 69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 80.53 | no |
| 69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | no | 88.284 | no |
| 69480 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 86.41 | no |
| 69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 95.496 | no |
| 69480 | flagellated | motile2+ | Ability to perform flagellated movement | no | 94.5 | no |
External links
@ref: 68799
culture collection no.: DSM 113480, TMW 2.2452
straininfo link
- @ref: 115712
- straininfo: 403714
literature
- topic: Phylogeny
- Pubmed-ID: 36260500
- title: Fructobacillus cardui sp. nov., isolated from a thistle (Carduus nutans) flower.
- authors: Gallus MK, Beer I, Ivleva NP, Ehrmann MA
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijsem.0.005553
- year: 2022
- mesh: RNA, Ribosomal, 16S/genetics, Base Composition, *Carduus/genetics, Catalase/genetics, DNA, Bacterial/genetics, Bacterial Typing Techniques, Sequence Analysis, DNA, Phylogeny, Fatty Acids/chemistry, Flowers, Nucleotides
- topic2: Transcriptome
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 68799 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-113480 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 113480) | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 115712 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID403714.1 |