Strain identifier
BacDive ID: 169425
Type strain: 
Species: Paenibacillus sp.
Strain Designation: 1-49
Strain history: <- J. Xie, China Agric. Univ., Beijing; 1-49 <- L. Wang
NCBI tax ID(s): 58172 (species)
version 9.1 (current version)
General
@ref: 68706
BacDive-ID: 169425
DSM-Number: 28492
keywords: genome sequence, 16S sequence, Bacteria, spore-forming
description: Paenibacillus sp. 1-49 is a spore-forming bacterium that was isolated from rhizosphere soil.
NCBI tax id
- NCBI tax id: 58172
- Matching level: species
strain history
- @ref: 68706
- history: <- J. Xie, China Agric. Univ., Beijing; 1-49 <- L. Wang
doi: 10.13145/bacdive169425.20240916.9.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Paenibacillaceae
- genus: Paenibacillus
- species: Paenibacillus sp.
- full scientific name: Paenibacillus Ash et al. 1994
synonyms
- @ref: 20215
- synonym: Aerobacillus
@ref: 68706
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Caryophanales
family: Paenibacillaceae
genus: Paenibacillus
species: Paenibacillus sp.
full scientific name: Paenibacillus sp.
strain designation: 1-49
type strain: no
Culture and growth conditions
culture medium
- @ref: 68706
- name: CASO AGAR (MERCK 105458) (DSMZ Medium 220)
- growth: yes
- link: https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium220.pdf
culture temp
- @ref: 68706
- growth: positive
- type: growth
- temperature: 30
Physiology and metabolism
spore formation
- @ref: 69480
- spore formation: yes
- confidence: 90.813
Isolation, sampling and environmental information
isolation
- @ref: 68706
- sample type: rhizosphere soil
- geographic location: Shanxi, Jingle (111° 93' E 38° 37'N)
- country: China
- origin.country: CHN
- continent: Asia
- latitude: 38.6167
- longitude: 112.55
Sequence information
16S sequences
- @ref: 68706
- description: Paenibacillus maysiensis 16S ribosomal RNA gene, partial sequence
- accession: JN873138.2
- length: 1480
- database: nuccore
- NCBI tax ID: 1155954
Genome sequences
- @ref: 66792
- description: Paenibacillus sp. 1-49
- accession: 1155954.3
- assembly level: wgs
- database: patric
- NCBI tax ID: 1155954
GC content
- @ref: 68706
- GC-content: 46.44
Genome-based predictions
predictions
| @ref | trait | model | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 63.748 | no |
| 69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 92.772 | no |
| 69480 | spore-forming | spore-forming | Ability to form endo- or exospores | yes | 90.813 | no |
| 69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | no | 66.064 | no |
| 69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 94.707 | yes |
| 69480 | flagellated | motile2+ | Ability to perform flagellated movement | yes | 87.617 | no |
External links
@ref: 68706
culture collection no.: DSM 28492
straininfo link
- @ref: 115644
- straininfo: 402215
literature
- topic: Metabolism
- Pubmed-ID: 29738214
- title: Medium optimization for nitrogen fixer Paenibacillus sp. 1-49.
- authors: Deng Z, Chen H, Chen S
- journal: Wei Sheng Wu Xue Bao
- year: 2016
- mesh: Bioreactors/microbiology, Culture Media/chemistry/metabolism, Fermentation, Nitrogen/analysis/*metabolism, Paenibacillus/growth & development/*metabolism, Sucrose/analysis/metabolism
- topic2: Cultivation
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 68706 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-28492 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 28492) | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 115644 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID402215.1 |