Strain identifier

BacDive ID: 169377

Type strain: No

Species: Bifidobacterium sp.

Strain history: <- P. Mattarelli, Dept. Agricult. Scs., Univ. Bologna, Italy; TRE 9 <- M. Modesto and S. Michelini

NCBI tax ID(s): 41200 (species)

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General

@ref: 68649

BacDive-ID: 169377

DSM-Number: 100686

keywords: Bacteria, mesophilic

description: Bifidobacterium sp. DSM 100686 is a mesophilic bacterium that was isolated from faeces of Saguinus oedipus.

NCBI tax id

  • NCBI tax id: 41200
  • Matching level: species

strain history

  • @ref: 68649
  • history: <- P. Mattarelli, Dept. Agricult. Scs., Univ. Bologna, Italy; TRE 9 <- M. Modesto and S. Michelini

doi: 10.13145/bacdive169377.20241212.9.2

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Bifidobacteriales
  • family: Bifidobacteriaceae
  • genus: Bifidobacterium
  • species: Bifidobacterium sp.
  • full scientific name: Bifidobacterium Orla-Jensen 1924 (Approved Lists 1980)

@ref: 68649

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Bifidobacteriales

family: Bifidobacteriaceae

genus: Bifidobacterium

species: Bifidobacterium sp.

full scientific name: Bifidobacterium sp.

type strain: no

Culture and growth conditions

culture medium

  • @ref: 68649
  • name: BIFIDOBACTERIUM MEDIUM (DSMZ Medium 58)
  • growth: yes
  • link: https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium58.pdf

culture temp

  • @ref: 68649
  • growth: positive
  • type: growth
  • temperature: 37

Physiology and metabolism

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate-builds acid from
68371gluconate-builds acid from24265
68371L-arabitol-builds acid from18403
68371D-arabitol+builds acid from18333
68371L-fucose+builds acid from18287
68371D-fucose-builds acid from28847
68371D-tagatose-builds acid from16443
68371D-lyxose-builds acid from62318
68371turanose+builds acid from32528
68371gentiobiose+builds acid from28066
68371xylitol-builds acid from17151
68371glycogen-builds acid from28087
68371starch-builds acid from28017
68371raffinose+builds acid from16634
68371melezitose-builds acid from6731
68371inulin-builds acid from15443
68371trehalose+builds acid from27082
68371sucrose+builds acid from17992
68371melibiose+builds acid from28053
68371lactose+builds acid from17716
68371maltose+builds acid from17306
68371cellobiose+builds acid from17057
68371salicin+builds acid from17814
68371esculin+builds acid from4853
68371arbutin+builds acid from18305
68371amygdalin-builds acid from27613
68371N-acetylglucosamine+builds acid from59640
68371methyl alpha-D-glucopyranoside+builds acid from320061
68371methyl alpha-D-mannoside-builds acid from43943
68371D-sorbitol+builds acid from17924
68371D-mannitol+builds acid from16899
68371myo-inositol-builds acid from17268
68371galactitol+builds acid from16813
68371L-rhamnose-builds acid from62345
68371L-sorbose-builds acid from17266
68371D-mannose+builds acid from16024
68371D-fructose+builds acid from15824
68371D-glucose+builds acid from17634
68371D-galactose+builds acid from12936
68371methyl beta-D-xylopyranoside-builds acid from74863
68371ribitol-builds acid from15963
68371L-xylose-builds acid from65328
68371D-xylose+builds acid from65327
68371D-ribose+builds acid from16988
68371L-arabinose+builds acid from30849
68371D-arabinose+builds acid from17108
68371erythritol-builds acid from17113
68371glycerol-builds acid from17754

API 50CHac

@refQGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
68649---++++---++++--+-++-++-+++++++++--+---++---++----

Isolation, sampling and environmental information

isolation

  • @ref: 68649
  • sample type: faeces of Saguinus oedipus
  • geographic location: Verona, Bussolengo, Parco Natura Viva
  • country: Italy
  • origin.country: ITA
  • continent: Europe

External links

@ref: 68649

culture collection no.: DSM 100686, TRE 9

straininfo link

  • @ref: 115600
  • straininfo: 397467

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
68371Automatically annotated from API 50CH acid
68649Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-100686Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 100686)
115600Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID397467.1