Strain identifier
BacDive ID: 169365
Type strain: 
Species: Acididesulfobacillus acetoxydans
Strain Designation: INE
Strain history: <- I. Sánchez-Andrea, Lab. Microbiology, Wageningen Univ., Netherlands; INE <- I. Sánchez-Andrea {2012}
NCBI tax ID(s): 1561005 (species)
version 9.3 (current version)
General
@ref: 68636
BacDive-ID: 169365
DSM-Number: 29876
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Acididesulfobacillus acetoxydans INE is a mesophilic bacterium that was isolated from acidic sediments.
NCBI tax id
- NCBI tax id: 1561005
- Matching level: species
strain history
- @ref: 68636
- history: <- I. Sánchez-Andrea, Lab. Microbiology, Wageningen Univ., Netherlands; INE <- I. Sánchez-Andrea {2012}
doi: 10.13145/bacdive169365.20250331.9.3
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Clostridia
- order: Eubacteriales
- family: Peptococcaceae
- genus: Acididesulfobacillus
- species: Acididesulfobacillus acetoxydans
- full scientific name: Acididesulfobacillus acetoxydans Sánchez-Andrea et al. 2023
@ref: 68636
domain: Bacteria
phylum: Bacillota
class: Clostridia
order: Eubacteriales
family: Peptococcaceae
genus: Acididesulfobacillus
species: Acididesulfobacillus acetoxydans
full scientific name: Acididesulfobacillus acetoxydans
strain designation: INE
type strain: yes
Culture and growth conditions
culture medium
- @ref: 68636
- name: DESULFOSPOROSINUS ACIDIPHILUS MEDIUM (DSMZ Medium 1250)
- growth: yes
- link: https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium1250.pdf
culture temp
- @ref: 68636
- growth: positive
- type: growth
- temperature: 30
Physiology and metabolism
oxygen tolerance
- @ref: 125439
- oxygen tolerance: anaerobe
- confidence: 92.9
Isolation, sampling and environmental information
isolation
- @ref: 68636
- sample type: acidic sediments
- geographic location: Huelva, Tinto River, JL dam
- country: Spain
- origin.country: ESP
- continent: Europe
- latitude: 37.6912
- longitude: -6.5606
Sequence information
16S sequences
- @ref: 68636
- description: Peptococcaceae bacterium strain-l partial 16S rRNA gene, isolate strain-l
- accession: LN551924
- length: 1555
- database: nuccore
- NCBI tax ID: 1541754
Genome sequences
- @ref: 66792
- description: Acididesulfobacillus acetoxydans INE
- accession: GCA_900016645
- assembly level: contig
- database: ncbi
- NCBI tax ID: 1561005
GC content
- @ref: 68636
- GC-content: 53.7
- method: sequence analysis
Genome-based predictions
predictions
| @ref | model | trait | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positive | Positive reaction to Gram-staining | no | 50.187 | no |
| 125438 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | yes | 85.638 | no |
| 125438 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | no | 88.62 | no |
| 125438 | spore-forming | spore-forming | Ability to form endo- or exospores | yes | 86.121 | no |
| 125438 | thermophile | thermophilic | Ability to grow at temperatures above or equal to 45°C | no | 79.2 | yes |
| 125438 | motile2+ | flagellated | Ability to perform flagellated movement | yes | 62.043 | no |
| 125439 | BacteriaNet | spore_formation | Ability to form endo- or exospores | yes | 68.4 | |
| 125439 | BacteriaNet | motility | Ability to perform movement | yes | 64.8 | |
| 125439 | BacteriaNet | gram_stain | Reaction to gram-staining | negative | 75.5 | |
| 125439 | BacteriaNet | oxygen_tolerance | Oxygenic conditions needed for growth | anaerobe | 92.9 |
External links
@ref: 68636
culture collection no.: DSM 29876, JCM 30553
straininfo link
- @ref: 115589
- straininfo: 399662
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 68636 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-29876 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 29876) | |
| 115589 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID399662.1 | |
| 125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann | Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets | 10.1101/2024.08.12.607695 | |
| 125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy | deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 | https://github.com/GenomeNet/deepG |