Strain identifier

BacDive ID: 169333

Type strain: No

Species: Vibrio sp.

Strain Designation: 10N.261.49.E11

Strain history: <- N. Bartlau, Univ. Vienna, Austria; 10N.261.49.E11

NCBI tax ID(s): 678 (species)

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General

@ref: 68591

BacDive-ID: 169333

DSM-Number: 113773

keywords: genome sequence, Bacteria, mesophilic, Gram-negative

description: Vibrio sp. 10N.261.49.E11 is a mesophilic, Gram-negative bacterium that was isolated from coastal surface seawater.

NCBI tax id

  • NCBI tax id: 678
  • Matching level: species

strain history

  • @ref: 68591
  • history: <- N. Bartlau, Univ. Vienna, Austria; 10N.261.49.E11

doi: 10.13145/bacdive169333.20250331.9.3

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Vibrionales
  • family: Vibrionaceae
  • genus: Vibrio
  • species: Vibrio sp.
  • full scientific name: Vibrio Pacini 1854 (Approved Lists 1980)

  • synonyms

    @refsynonym
    20215Beneckea
    20215Lucibacterium
    20215Allomonas

@ref: 68591

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Vibrionales

family: Vibrionaceae

genus: Vibrio

species: Vibrio sp.

full scientific name: Vibrio sp.

strain designation: 10N.261.49.E11

type strain: no

Morphology

cell morphology

@refgram stainconfidence
125438negative100
125439negative99

Culture and growth conditions

culture medium

@refnamegrowthlink
68591BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium514.pdf
68591COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium693.pdf

culture temp

  • @ref: 68591
  • growth: positive
  • type: growth
  • temperature: 25

Physiology and metabolism

spore formation

@refspore formationconfidence
125439no99.3
125438no92.365

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836830849L-arabinose-fermentation
6836827613amygdalin-fermentation
6836828053melibiose-fermentation
6836817992sucrose-fermentation
6836862345L-rhamnose-fermentation
6836830911sorbitol-fermentation
6836817268myo-inositol-fermentation
6836816899D-mannitol-fermentation
6836817634D-glucose-fermentation
683685291gelatin+hydrolysis
6836827897tryptophan-energy source
6836816199urea-hydrolysis
6836816947citrate-assimilation
6836818257ornithine-degradation
6836825094lysine-degradation
6836829016arginine-hydrolysis

metabolite production

@refChebi-IDmetaboliteproduction
6836815688acetoinno
6836835581indoleno
6836816136hydrogen sulfideno

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testindole test
6836815688acetoin-
6836835581indole-

enzymes

@refvalueactivityec
68368cytochrome oxidase+1.9.3.1
68368gelatinase+
68368tryptophan deaminase-4.1.99.1
68368urease-3.5.1.5
68368ornithine decarboxylase-4.1.1.17
68368lysine decarboxylase-4.1.1.18
68368arginine dihydrolase-3.5.3.6
68368beta-galactosidase+3.2.1.23

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGELGLUMANINOSorRHASACMELAMYARAOX
68591+---------+---------+

Isolation, sampling and environmental information

isolation

  • @ref: 68591
  • sample type: coastal surface seawater
  • geographic location: New York
  • country: USA
  • origin.country: USA
  • continent: North America
  • latitude: 42.419
  • longitude: -70.907

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Vibrio sp. 10N.261.49.E11GCA_002876915scaffoldncbi1880848
66792Vibrio sp. 10N.261.49.E111880848.3wgspatric1880848

Genome-based predictions

predictions

@refmodeltraitdescriptionpredictionconfidencetraining_data
125438gram-positivegram-positivePositive reaction to Gram-stainingno100no
125438anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)no95.066no
125438aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)no68.498no
125438spore-formingspore-formingAbility to form endo- or exosporesno92.365no
125438thermophilethermophilicAbility to grow at temperatures above or equal to 45°Cno100yes
125438motile2+flagellatedAbility to perform flagellated movementyes88.596no
125439BacteriaNetspore_formationAbility to form endo- or exosporesno99.3
125439BacteriaNetmotilityAbility to perform movementyes68.7
125439BacteriaNetgram_stainReaction to gram-stainingnegative99
125439BacteriaNetoxygen_toleranceOxygenic conditions needed for growthobligate aerobe87.6

External links

@ref: 68591

culture collection no.: DSM 113773

straininfo link

  • @ref: 115561
  • straininfo: 399052

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68368Automatically annotated from API 20E
68591Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-113773Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 113773)
115561Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID399052.1
125438Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg OvermannPredicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets10.1101/2024.08.12.607695
125439Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardydeepG: Deep Learning for Genome Sequence Data. R package version 0.3.1https://github.com/GenomeNet/deepG