Strain identifier
BacDive ID: 169316
Type strain: 
Species: Capillimicrobium parvum
Strain Designation: 0166_1
Strain history: <- A. Geppert; Leibniz Institute DSMZ, Braunschweig, DEUTSCHLAND; 0166_1<-S. G. Vieira
General
@ref: 68571
BacDive-ID: 169316
DSM-Number: 104329
keywords: genome sequence, Bacteria, mesophilic
description: Capillimicrobium parvum 0166_1 is a mesophilic bacterium that was isolated from Grassland soil from the Heinich, plot 6.
strain history
- @ref: 68571
- history: <- A. Geppert; Leibniz Institute DSMZ, Braunschweig, DEUTSCHLAND; 0166_1<-S. G. Vieira
doi: 10.13145/bacdive169316.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Thermoleophilia
- order: Solirubrobacterales
- family: Capillimicrobiaceae
- genus: Capillimicrobium
- species: Capillimicrobium parvum
- full scientific name: Capillimicrobium parvum Vieira et al. 2022
@ref: 68571
domain: Bacteria
phylum: Actinomycetota
class: Thermoleophilia
order: Solirubrobacterales
family: Capillimicrobiaceae
genus: Capillimicrobium
species: Capillimicrobium parvum
full scientific name: Capillimicrobium parvum Vieira et al. 2022
strain designation: 0166_1
type strain: yes
Culture and growth conditions
culture medium
| @ref | name | growth | link |
|---|---|---|---|
| 68571 | HETEROTROPHIC MEDIUM H3P (DSMZ Medium 428) | yes | https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium428.pdf |
| 68571 | R2A MEDIUM (DSMZ Medium 830) | yes | https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium830.pdf |
culture temp
- @ref: 68571
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 68571
- sample type: Grassland soil from the Heinich, plot 6
- geographic location: Grassland soil from the Heinich, plot 6; Thuringia
- country: Germany
- origin.country: DEU
- continent: Europe
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Capillimicrobium parvum 0166_1 | GCA_021172045 | complete | ncbi | 2884022 |
| 66792 | Solirubrobacterales bacterium 0166_1 | 2884022.3 | complete | patric | 2884022 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| flagellated | no | 94.748 | no |
| gram-positive | yes | 76.289 | no |
| anaerobic | no | 93.66 | no |
| aerobic | yes | 80.857 | no |
| halophile | no | 90.337 | no |
| spore-forming | no | 90.671 | no |
| motile | yes | 65.73 | no |
| thermophile | no | 93.558 | yes |
| glucose-util | yes | 75.058 | no |
| glucose-ferment | no | 89.734 | no |
External links
@ref: 68571
culture collection no.: DSM 104329, LMG 29999, CECT 9240
straininfo link
- @ref: 115549
- straininfo: 396851
literature
- topic: Phylogeny
- Pubmed-ID: 36018778
- title: Capillimicrobium parvum gen. nov., sp. nov., a novel representative of Capillimicrobiaceae fam. nov. within the order Solirubrobacterales, isolated from a grassland soil.
- authors: Vieira S, Huber KJ, Geppert A, Wolf J, Neumann-Schaal M, Luckner M, Wanner G, Musken M, Overmann J
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijsem.0.005508
- year: 2022
- mesh: Bacteria, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, *Grassland, Phospholipids, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil
- topic2: Transcriptome
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 68571 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-104329 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 104329) | |
| 115549 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID396851.1 |