Strain identifier
BacDive ID: 169297
Type strain: 
Species: Staphylococcus capitis
Strain Designation: K1-2-2-23
Strain history: <- K. Siems, Deutsches Zentrum für Luft- und Raumfahrt; K1-2-2-23 <- K.M. Rogowski, Beuth Hochschule für Technik;
NCBI tax ID(s): 29388 (species)
General
@ref: 68550
BacDive-ID: 169297
DSM-Number: 111179
keywords: genome sequence, Bacteria, human pathogen
description: Staphylococcus capitis K1-2-2-23 is a human pathogen that was isolated from ISS indoor enironment, V2A steel surface. Exposure experiment .
NCBI tax id
- NCBI tax id: 29388
- Matching level: species
strain history
- @ref: 68550
- history: <- K. Siems, Deutsches Zentrum für Luft- und Raumfahrt; K1-2-2-23 <- K.M. Rogowski, Beuth Hochschule für Technik;
doi: 10.13145/bacdive169297.20240916.9.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Staphylococcaceae
- genus: Staphylococcus
- species: Staphylococcus capitis
- full scientific name: Staphylococcus capitis Kloos and Schleifer 1975 (Approved Lists 1980)
@ref: 68550
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Caryophanales
family: Staphylococcaceae
genus: Staphylococcus
species: Staphylococcus capitis
full scientific name: Staphylococcus capitis Kloos and Schleifer 1975
strain designation: K1-2-2-23
type strain: no
Culture and growth conditions
culture medium
- @ref: 68550
- name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)
- growth: yes
- link: https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium92.pdf
culture temp
- @ref: 68550
- growth: positive
- type: growth
- temperature: 28
Isolation, sampling and environmental information
isolation
- @ref: 68550
- sample type: ISS indoor enironment, V2A steel surface. Exposure experiment ("BIORISK")
- geographic location: International Space station
- country: USA
- origin.country: USA
- continent: North America
Safety information
risk assessment
- @ref: 68550
- pathogenicity human: yes, in single cases
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Staphylococcus capitis subsp. capitis K1-2-2-23 | GCA_025272695 | complete | ncbi | 72758 |
| 66792 | Staphylococcus capitis subsp. capitis strain K1-2-2-23 | 72758.24 | complete | patric | 72758 |
Genome-based predictions
predictions
| @ref | trait | model | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 86.966 | no |
| 69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 99.451 | no |
| 69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 65.983 | no |
| 69480 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 72.477 | no |
| 69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 98.192 | yes |
| 69480 | flagellated | motile2+ | Ability to perform flagellated movement | no | 80.554 | no |
External links
@ref: 68550
culture collection no.: DSM 111179
straininfo link
- @ref: 115534
- straininfo: 402646
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 68550 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-111179 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 111179) | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 115534 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID402646.1 |