Strain identifier
BacDive ID: 169277
Type strain: 
Species: Pseudomonas aeruginosa
Strain Designation: US449
Strain history: <- J. Wagemans, KU Leuven, Belgium;
NCBI tax ID(s): 287 (species)
version 9.3 (current version)
General
@ref: 68525
BacDive-ID: 169277
DSM-Number: 113938
keywords: genome sequence, Bacteria, aerobe, mesophilic, motile, human pathogen
description: Pseudomonas aeruginosa US449 is an aerobe, mesophilic, motile human pathogen that was isolated from sputum.
NCBI tax id
- NCBI tax id: 287
- Matching level: species
strain history
- @ref: 68525
- history: <- J. Wagemans, KU Leuven, Belgium;
doi: 10.13145/bacdive169277.20250331.9.3
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Pseudomonadales
- family: Pseudomonadaceae
- genus: Pseudomonas
- species: Pseudomonas aeruginosa
- full scientific name: Pseudomonas aeruginosa (Schroeter 1872) Migula 1900 (Approved Lists 1980)
synonyms
- @ref: 20215
- synonym: Bacterium aeruginosum
@ref: 68525
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Pseudomonadales
family: Pseudomonadaceae
genus: Pseudomonas
species: Pseudomonas aeruginosa
full scientific name: Pseudomonas aeruginosa (Schroeter 1872) Migula 1900
strain designation: US449
type strain: no
Morphology
cell morphology
| @ref | gram stain | confidence | motility |
|---|---|---|---|
| 125438 | negative | 97.5 | |
| 125438 | 92.244 | yes | |
| 125439 | negative | 96.7 |
Culture and growth conditions
culture medium
- @ref: 68525
- name: LB (Luria-Bertani) MEDIUM (DSMZ Medium 381)
- growth: yes
- link: https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium381.pdf
culture temp
- @ref: 68525
- growth: positive
- type: growth
- temperature: 37
Physiology and metabolism
oxygen tolerance
- @ref: 125438
- oxygen tolerance: aerobe
- confidence: 94.904
spore formation
- @ref: 125439
- spore formation: no
- confidence: 98.5
Isolation, sampling and environmental information
isolation
- @ref: 68525
- sample type: sputum
- country: USA
- origin.country: USA
- continent: North America
Safety information
risk assessment
- @ref: 68525
- pathogenicity human: yes
- pathogenicity animal: yes
- biosafety level: 2
- biosafety level comment: Risk group (German classification)
Sequence information
Genome sequences
- @ref: 66792
- description: Pseudomonas aeruginosa US449
- accession: GCA_023822305
- assembly level: complete
- database: ncbi
- NCBI tax ID: 287
Genome-based predictions
predictions
| @ref | model | trait | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positive | Positive reaction to Gram-staining | no | 97.5 | no |
| 125438 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 98.358 | no |
| 125438 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 94.904 | no |
| 125438 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 86.95 | no |
| 125438 | thermophile | thermophilic | Ability to grow at temperatures above or equal to 45°C | no | 100 | no |
| 125438 | motile2+ | flagellated | Ability to perform flagellated movement | yes | 92.244 | no |
| 125439 | BacteriaNet | spore_formation | Ability to form endo- or exospores | no | 98.5 | |
| 125439 | BacteriaNet | motility | Ability to perform movement | yes | 89.7 | |
| 125439 | BacteriaNet | gram_stain | Reaction to gram-staining | negative | 96.7 | |
| 125439 | BacteriaNet | oxygen_tolerance | Oxygenic conditions needed for growth | obligate aerobe | 74 |
External links
@ref: 68525
culture collection no.: DSM 113938
straininfo link
- @ref: 115516
- straininfo: 402683
phages
- @ref: 124042
- name: Pseudomonas phage LUZ7
- strain number: DSM 113938
- link: https://phagedive.dsmz.de/strain/1163
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 68525 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-113938 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 113938) | |
| 115516 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID402683.1 | |
| 124042 | Johannes Wittmann, Clara Rolland, Lorenz Reimer, Joaquim Sardà | PhageDive | https://phagedive.dsmz.de/ | |
| 125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann | Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets | 10.1101/2024.08.12.607695 | |
| 125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy | deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 | https://github.com/GenomeNet/deepG |