Strain identifier
BacDive ID: 169196
Type strain: 
Species: Mucisphaera calidilacus
Strain Designation: Pan265
Strain history: <- M. Jogler, Leibniz-Institut DSMZ GmbH, Braunschweig, Germany; Pan265 <- A. Stieler, Leibniz-Institut DSMZ GmbH, Braunschweig, Germany;
NCBI tax ID(s): 2527982 (species)
version 9.1 (current version)
General
@ref: 68433
BacDive-ID: 169196
DSM-Number: 100697
keywords: genome sequence, Bacteria, Gram-negative
description: Mucisphaera calidilacus Pan265 is a Gram-negative bacterium that was isolated from red biofilm in a hydrothermal area.
NCBI tax id
- NCBI tax id: 2527982
- Matching level: species
strain history
- @ref: 68433
- history: <- M. Jogler, Leibniz-Institut DSMZ GmbH, Braunschweig, Germany; Pan265 <- A. Stieler, Leibniz-Institut DSMZ GmbH, Braunschweig, Germany;
doi: 10.13145/bacdive169196.20240916.9.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/planctomycetota
- domain: Bacteria
- phylum: Planctomycetota
- class: Phycisphaerae
- order: Phycisphaerales
- family: Phycisphaeraceae
- genus: Mucisphaera
- species: Mucisphaera calidilacus
- full scientific name: Mucisphaera calidilacus Kallscheuer et al. 2022
@ref: 68433
domain: Bacteria
phylum: Planctomycetes
class: Phycisphaerae
order: Phycisphaerales
family: Phycisphaeraceae
genus: Mucisphaera
species: Mucisphaera calidilacus
full scientific name: Mucisphaera calidilacus
strain designation: Pan265
type strain: yes
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 94.96
multimedia
- @ref: 68433
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_100697.jpg
- caption: DSM 100697, scale bar represents 1 µm
- intellectual property rights: Leibniz-Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH
Culture and growth conditions
culture medium
- @ref: 68433
- name: PLANCTOMYCES MEDIUM (DSMZ Medium 1560)
- growth: yes
- link: https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium1560.pdf
culture temp
- @ref: 68433
- growth: positive
- type: growth
- temperature: 28
Isolation, sampling and environmental information
isolation
- @ref: 68433
- sample type: red biofilm in a hydrothermal area
- geographic location: area in the Tyrrhenian Sea close to the Lipari Islands
- country: Italy
- origin.country: ITA
- continent: Europe
Sequence information
Genome sequences
- @ref: 66792
- description: Mucisphaera calidilacus Pan265
- accession: GCA_007748075
- assembly level: complete
- database: ncbi
- NCBI tax ID: 2527982
GC content
- @ref: 68433
- GC-content: 63.9
Genome-based predictions
predictions
| @ref | trait | model | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | no | 94.96 | no |
| 69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 68.39 | no |
| 69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 55.418 | no |
| 69480 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 84.123 | no |
| 69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 82.832 | yes |
| 69480 | flagellated | motile2+ | Ability to perform flagellated movement | yes | 56.289 | no |
External links
@ref: 68433
culture collection no.: DSM 100697, CECT 30425
straininfo link
- @ref: 115442
- straininfo: 406341
literature
- topic: Phylogeny
- Pubmed-ID: 35050438
- title: Mucisphaera calidilacus gen. nov., sp. nov., a novel planctomycete of the class Phycisphaerae isolated in the shallow sea hydrothermal system of the Lipari Islands.
- authors: Kallscheuer N, Jogler C, Peeters SH, Boedeker C, Jogler M, Heuer A, Jetten MSM, Rohde M, Wiegand S
- journal: Antonie Van Leeuwenhoek
- DOI: 10.1007/s10482-021-01707-3
- year: 2022
- mesh: Bacterial Typing Techniques, DNA, Bacterial/genetics, *Fatty Acids/analysis, *Hydrothermal Vents, Islands, Phylogeny, Planctomycetes, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA
- topic2: Transcriptome
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 68433 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-100697 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 100697) | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 115442 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID406341.1 |