Strain identifier
BacDive ID: 1690
Type strain:
Species: Bifidobacterium bifidum
Strain Designation: Hl 3
Strain history: <- N. Weiss, Hl 3
NCBI tax ID(s): 398515 (strain), 1681 (species)
General
@ref: 8484
BacDive-ID: 1690
DSM-Number: 20215
keywords: 16S sequence, Bacteria, anaerobe, mesophilic
description: Bifidobacterium bifidum Hl 3 is an anaerobe, mesophilic bacterium that was isolated from intestine of adult.
NCBI tax id
NCBI tax id | Matching level |
---|---|
398515 | strain |
1681 | species |
strain history
- @ref: 8484
- history: <- N. Weiss, Hl 3
doi: 10.13145/bacdive1690.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Bifidobacteriales
- family: Bifidobacteriaceae
- genus: Bifidobacterium
- species: Bifidobacterium bifidum
- full scientific name: Bifidobacterium bifidum (Tissier 1900) Orla-Jensen 1924 (Approved Lists 1980)
synonyms
@ref synonym 20215 Bacillus bifidus 20215 Bacterium bifidum
@ref: 8484
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Bifidobacteriales
family: Bifidobacteriaceae
genus: Bifidobacterium
species: Bifidobacterium bifidum
full scientific name: Bifidobacterium bifidum (Tissier 1900) Orla-Jensen 1924 emend. Nouioui et al. 2018
strain designation: Hl 3
type strain: no
Culture and growth conditions
culture medium
- @ref: 8484
- name: BIFIDOBACTERIUM MEDIUM (DSMZ Medium 58)
- growth: yes
- link: https://mediadive.dsmz.de/medium/58
- composition: Name: BIFIDOBACTERIUM MEDIUM (DSMZ Medium 58) Composition: Glucose 10.0 g/l Casein peptone 10.0 g/l Bacto Soytone 5.0 g/l Meat extract 5.0 g/l Yeast extract 5.0 g/l L-Cysteine HCl x H2O 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l MnSO4 x H2O 0.05 g/l KH2PO4 0.04 g/l K2HPO4 0.04 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l Tween 80 Resazurin Distilled water
culture temp
- @ref: 8484
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Physiology and metabolism
oxygen tolerance
- @ref: 8484
- oxygen tolerance: anaerobe
murein
- @ref: 8484
- murein short key: A21.07
- type: A4ß L-Orn-D-Ser-D-Asp
metabolite utilization
@ref | metabolite | utilization activity | kind of utilization tested | Chebi-ID |
---|---|---|---|---|
68371 | Potassium 5-ketogluconate | - | builds acid from | |
68371 | Potassium 2-ketogluconate | - | builds acid from | |
68371 | gluconate | - | builds acid from | 24265 |
68371 | L-arabitol | - | builds acid from | 18403 |
68371 | D-arabitol | - | builds acid from | 18333 |
68371 | L-fucose | - | builds acid from | 18287 |
68371 | D-fucose | - | builds acid from | 28847 |
68371 | D-tagatose | - | builds acid from | 16443 |
68371 | D-lyxose | - | builds acid from | 62318 |
68371 | turanose | - | builds acid from | 32528 |
68371 | xylitol | - | builds acid from | 17151 |
68371 | glycogen | - | builds acid from | 28087 |
68371 | starch | - | builds acid from | 28017 |
68371 | raffinose | - | builds acid from | 16634 |
68371 | melezitose | - | builds acid from | 6731 |
68371 | inulin | - | builds acid from | 15443 |
68371 | trehalose | - | builds acid from | 27082 |
68371 | sucrose | - | builds acid from | 17992 |
68371 | melibiose | - | builds acid from | 28053 |
68371 | lactose | + | builds acid from | 17716 |
68371 | maltose | - | builds acid from | 17306 |
68371 | cellobiose | - | builds acid from | 17057 |
68371 | salicin | - | builds acid from | 17814 |
68371 | esculin | - | builds acid from | 4853 |
68371 | arbutin | - | builds acid from | 18305 |
68371 | amygdalin | - | builds acid from | 27613 |
68371 | N-acetylglucosamine | - | builds acid from | 59640 |
68371 | methyl alpha-D-glucopyranoside | - | builds acid from | 320061 |
68371 | methyl alpha-D-mannoside | - | builds acid from | 43943 |
68371 | D-sorbitol | - | builds acid from | 17924 |
68371 | D-mannitol | - | builds acid from | 16899 |
68371 | myo-inositol | - | builds acid from | 17268 |
68371 | galactitol | - | builds acid from | 16813 |
68371 | L-rhamnose | - | builds acid from | 62345 |
68371 | L-sorbose | - | builds acid from | 17266 |
68371 | D-mannose | - | builds acid from | 16024 |
68371 | D-fructose | + | builds acid from | 15824 |
68371 | D-glucose | + | builds acid from | 17634 |
68371 | D-galactose | - | builds acid from | 12936 |
68371 | methyl beta-D-xylopyranoside | - | builds acid from | 74863 |
68371 | ribitol | - | builds acid from | 15963 |
68371 | L-xylose | - | builds acid from | 65328 |
68371 | D-xylose | - | builds acid from | 65327 |
68371 | D-ribose | - | builds acid from | 16988 |
68371 | L-arabinose | - | builds acid from | 30849 |
68371 | D-arabinose | - | builds acid from | 17108 |
68371 | erythritol | - | builds acid from | 17113 |
68371 | glycerol | - | builds acid from | 17754 |
API 50CHac
@ref | Q | GLY | ERY | DARA | LARA | RIB | DXYL | LXYL | ADO | MDX | GAL | GLU | FRU | MNE | SBE | RHA | DUL | INO | MAN | SOR | MDM | MDG | NAG | AMY | ARB | ESC | SAL | CEL | MAL | LAC | MEL | SAC | TRE | INU | MLZ | RAF | AMD | GLYG | XLT | GEN | TUR | LYX | TAG | DFUC | LFUC | DARL | LARL | GNT | 2KG | 5KG |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
8484 | - | - | - | - | - | - | - | - | - | - | - | + | + | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | + | - | - | - | - | - | - | - | - | - | +/- | - | - | - | - | - | - | - | - | - | - |
Isolation, sampling and environmental information
isolation
- @ref: 8484
- sample type: intestine of adult
isolation source categories
- Cat1: #Host Body-Site
- Cat2: #Gastrointestinal tract
Safety information
risk assessment
- @ref: 8484
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 20218
- description: Bifidobacterium bifidum DSM 20215 16S ribosomal RNA gene and 16S-23S ribosomal RNA intergenic spacer, partial sequence
- accession: JQ347251
- length: 743
- database: ena
- NCBI tax ID: 398515
External links
@ref: 8484
culture collection no.: DSM 20215
straininfo link
- @ref: 71337
- straininfo: 7404
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Enzymology | 11319112 | Intra- and extracellular beta-galactosidases from Bifidobacterium bifidum and B. infantis: molecular cloning, heterologous expression, and comparative characterization. | Moller PL, Jorgensen F, Hansen OC, Madsen SM, Stougaard P | Appl Environ Microbiol | 10.1128/AEM.67.5.2276-2283.2001 | 2001 | Amino Acid Sequence, Bifidobacterium/classification/*enzymology/genetics, Binding Sites/genetics, Escherichia coli/enzymology/genetics, Genes, Bacterial, Molecular Sequence Data, Recombinant Proteins/metabolism, Sequence Analysis, DNA, Substrate Specificity, *beta-Galactosidase/chemistry/genetics/isolation & purification/metabolism | Phylogeny |
Metabolism | 11778873 | High-efficiency synthesis of oligosaccharides with a truncated beta-galactosidase from Bifidobacterium bifidum. | Jorgensen F, Hansen OC, Stougaard P | Appl Microbiol Biotechnol | 10.1007/s00253-001-0845-z | 2001 | Bifidobacterium/*enzymology/genetics, Biotechnology, Escherichia coli/genetics, Hydrolysis, Lactose/metabolism, Molecular Weight, Oligosaccharides/*biosynthesis, Recombinant Proteins/chemistry/genetics/metabolism, Sequence Deletion, beta-Galactosidase/chemistry/genetics/*metabolism | Biotechnology |
Enzymology | 17684740 | Molecular cloning and comparative analysis of four beta-galactosidase genes from Bifidobacterium bifidum NCIMB41171. | Goulas TK, Goulas AK, Tzortzis G, Gibson GR | Appl Microbiol Biotechnol | 10.1007/s00253-007-1099-1 | 2007 | Amino Acid Sequence, Bacterial Proteins/chemistry/genetics/metabolism, Bifidobacterium/*enzymology/*genetics, Cloning, Molecular, Gene Expression Regulation, Bacterial, Protein Structure, Tertiary, beta-Galactosidase/chemistry/*genetics/metabolism | Metabolism |
Metabolism | 30919101 | The antioxidant and prebiotic properties of lactobionic acid. | Goderska K | Appl Microbiol Biotechnol | 10.1007/s00253-019-09754-7 | 2019 | Antioxidants/*chemistry/*metabolism, Disaccharides/*chemistry/*metabolism, Hot Temperature, Lactobacillus fermentum/growth & development/metabolism, Oxidation-Reduction, Peroxides/chemistry, Prebiotics/*analysis, Pseudomonas/*metabolism, Rapeseed Oil/chemistry, Whey/metabolism/*microbiology, Whey Proteins/metabolism | Stress |
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
8484 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 20215) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-20215 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
68371 | Automatically annotated from API 50CH acid | |||||
71337 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID7404.1 | StrainInfo: A central database for resolving microbial strain identifiers |