Strain identifier

BacDive ID: 169

Type strain: Yes

Species: Schaalia turicensis

Strain Designation: APL10

Strain history: <- J. Wüst, APL10

NCBI tax ID(s): 131111 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 3501

BacDive-ID: 169

DSM-Number: 9168

keywords: mesophilic, Bacteria, 16S sequence

description: Schaalia turicensis APL10 is a mesophilic bacterium that was isolated from perianal abscess.

NCBI tax id

  • NCBI tax id: 131111
  • Matching level: species

strain history: <- J. Wüst, APL10

doi: 10.13145/bacdive169.20220920.7

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Actinomycetales
  • family: Actinomycetaceae
  • genus: Schaalia
  • species: Schaalia turicensis
  • full scientific name: Schaalia turicensis (Wüst et al. 1995) Nouioui et al. 2018
  • synonyms

    • @ref: 20215
    • synonym: Actinomyces turicensis

@ref: 3501

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Actinomycetaceae

genus: Schaalia

species: Schaalia turicensis

full scientific name: Schaalia turicensis (Wüst et al. 1995) Nouioui et al. 2018

strain designation: APL10

type strain: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
3501COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://bacmedia.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
39274MEDIUM 6 - Columbia agar with 10 % horse bloodyesDistilled water make up to (1000.000 ml);Columbia agar (39.000 g);Horseblood (100.000 ml)

culture temp

@refgrowthtypetemperaturerange
3501positivegrowth37mesophilic
39274positivegrowth37mesophilic

Physiology and metabolism

murein

  • @ref: 3501
  • murein short key: A21.11
  • type: A5ß L-Orn-L-Lys-D-Glu

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6838027897tryptophan-energy source
6838017632nitrate-reduction
6838029985L-glutamate-degradation
6838016634raffinose-fermentation
6838016024D-mannose-fermentation
6838029016arginine-hydrolysis
6838016199urea-hydrolysis

metabolite production

  • @ref: 68380
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68380
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68380glutamyl-glutamate arylamidase-
68380tyrosine arylamidase+
68380pyrrolidonyl arylamidase-3.4.19.3
68380phenylalanine arylamidase+
68380proline-arylamidase+3.4.11.5
68380alkaline phosphatase-3.1.3.1
68380tryptophan deaminase-4.1.99.1
68380alpha-fucosidase+3.2.1.51
68380glutamate decarboxylase-4.1.1.15
68380N-acetyl-beta-glucosaminidase-3.2.1.52
68380beta-glucuronidase-3.2.1.31
68380alpha-arabinosidase-3.2.1.55
68380beta-glucosidase-3.2.1.21
68380alpha-glucosidase+3.2.1.20
68380beta-Galactosidase 6-phosphate-
68380beta-galactosidase-3.2.1.23
68380alpha-galactosidase-3.2.1.22
68380arginine dihydrolase-3.5.3.6
68380urease-3.5.1.5

fatty acid profile

  • fatty acids

    @reffatty acidpercentageECL
    65613C14:02.214
    65613C16:025.316
    65613C18:012.618
    65613C16:1 ω7c3.315.819
    65613C18:1 ω9c2817.769
    65613C18:2 ω6,9c/C18:0 ANTE26.417.724
    65613Unidentified2.118.218
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG

API rID32A

@refUREADH Argalpha GALbeta GALbeta GPalpha GLUbeta GLUalpha ARAbeta GURbeta NAGMNERAFGDCalpha FUCNITINDPALArgAProALGAPheALeuAPyrATyrAAlaAGlyAHisAGGASerA
3501-----+-------+---+/-++/-++/--++/-+/-+/--+/-

Isolation, sampling and environmental information

isolation

  • @ref: 3501
  • sample type: perianal abscess
  • geographic location: Zürich
  • country: Switzerland
  • origin.country: CHE
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Host Body-Site#Gastrointestinal tract
#Host Body-Site#Other#Abscess

Safety information

risk assessment

  • @ref: 3501
  • biosafety level: 2
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 3501
  • description: Actinomyces turicensis 16S rRNA gene, strain APL10
  • accession: X78720
  • length: 1453
  • database: ena
  • NCBI tax ID: 131111

GC content

  • @ref: 3501
  • GC-content: 58
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 3501

culture collection no.: DSM 9168, ATCC 51857, CCUG 32401, CIP 105357

straininfo link

@refpassport
20218http://www.straininfo.net/strains/33266
20218http://www.straininfo.net/strains/33263
20218http://www.straininfo.net/strains/33264
20218http://www.straininfo.net/strains/148397

literature

  • topic: Phylogeny
  • Pubmed-ID: 7534464
  • title: Assignment of Actinomyces pyogenes-like (CDC coryneform group E) bacteria to the genus Actinomyces as Actinomyces radingae sp. nov. and Actinomyces turicensis sp. nov.
  • authors: Wust J, Stubbs S, Weiss N, Funke G, Collins MD
  • journal: Lett Appl Microbiol
  • DOI: 10.1111/j.1472-765x.1995.tb01290.x
  • year: 1995
  • mesh: Actinomyces/chemistry/classification/*genetics, Amino Acid Sequence, Fatty Acids/analysis, Molecular Sequence Data, RNA, Bacterial/*genetics, RNA, Ribosomal, 16S/*genetics, Sequence Analysis, RNA, Sequence Homology, Nucleic Acid, Species Specificity
  • topic2: Genetics

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
3501Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 9168)https://www.dsmz.de/collection/catalogue/details/culture/DSM-9168
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
39274Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/17368
65613Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 32401)https://www.ccug.se/strain?id=32401
68380Automatically annotated from API rID32A