Strain identifier

BacDive ID: 16899

Type strain: Yes

Species: Coprothermobacter proteolyticus

Strain Designation: BT

Strain history: <- D.R. Boone <- R.A. Mah <- B.M. Ollivier, BT

NCBI tax ID(s): 309798 (strain), 35786 (species)

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General

@ref: 1976

BacDive-ID: 16899

DSM-Number: 5265

keywords: genome sequence, 16S sequence, Bacteria, anaerobe, thermophilic

description: Coprothermobacter proteolyticus BT is an anaerobe, thermophilic bacterium that was isolated from thermophilic digestor.

NCBI tax id

NCBI tax idMatching level
35786species
309798strain

strain history

  • @ref: 1976
  • history: <- D.R. Boone <- R.A. Mah <- B.M. Ollivier, BT

doi: 10.13145/bacdive16899.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/coprothermobacterota
  • domain: Bacteria
  • phylum: Coprothermobacterota
  • class: Coprothermobacteria
  • order: Coprothermobacterales
  • family: Coprothermobacteraceae
  • genus: Coprothermobacter
  • species: Coprothermobacter proteolyticus
  • full scientific name: Coprothermobacter proteolyticus (Ollivier et al. 1985) Rainey and Stackebrandt 1993

  • synonyms

    • @ref: 20215
    • synonym: Thermobacteroides proteolyticus

@ref: 1976

domain: Bacteria

phylum: Coprothermobacterota

class: Coprothermobacteria

order: Thermoanaerobacterales

family: Coprothermobacteraceae

genus: Coprothermobacter

species: Coprothermobacter proteolyticus

full scientific name: Coprothermobacter proteolyticus (Ollivier et al. 1985) Rainey and Stackebrandt 1993

strain designation: BT

type strain: yes

Culture and growth conditions

culture medium

  • @ref: 1976
  • name: COPROTHERMOBACTER PROTEOLYTICUS MEDIUM (DSMZ Medium 481)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/481
  • composition: Name: COPROTHERMOBACTER PROTEOLYTICUS MEDIUM (DSMZ Medium 481) Composition: Yeast extract 1.9802 g/l Trypticase 1.9802 g/l Na2CO3 1.48515 g/l NH4Cl 0.990099 g/l MgCl2 x 6 H2O 0.990099 g/l K2HPO4 0.39604 g/l Na2S x 9 H2O 0.29703 g/l MgSO4 x 7 H2O 0.029703 g/l Nitrilotriacetic acid 0.0148515 g/l NaCl 0.00990099 g/l MnSO4 x H2O 0.00495049 g/l ZnSO4 x 7 H2O 0.00178218 g/l CoSO4 x 7 H2O 0.00178218 g/l CaCl2 x 2 H2O 0.000990099 g/l FeSO4 x 7 H2O 0.000990099 g/l Sodium resazurin 0.00049505 g/l NiCl2 x 6 H2O 0.00029703 g/l AlK(SO4)2 x 12 H2O 0.00019802 g/l Na2MoO4 x 2 H2O 9.90099e-05 g/l CuSO4 x 5 H2O 9.90099e-05 g/l H3BO3 9.90099e-05 g/l Na2WO4 x 2 H2O 3.9604e-06 g/l Na2SeO3 x 5 H2O 2.9703e-06 g/l Distilled water

culture temp

  • @ref: 1976
  • growth: positive
  • type: growth
  • temperature: 60
  • range: thermophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 1976
  • oxygen tolerance: anaerobe

Isolation, sampling and environmental information

isolation

  • @ref: 1976
  • sample type: thermophilic digestor
  • country: France
  • origin.country: FRA
  • continent: Europe

isolation source categories

Cat1Cat2
#Engineered#Biodegradation
#Condition#Thermophilic (>45°C)

taxonmaps

  • @ref: 69479
  • File name: preview.99_3217.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15913;96_1675;97_2005;98_2465;99_3217&stattab=map
  • Last taxonomy: Coprothermobacter proteolyticus subclade
  • 16S sequence: X69335
  • Sequence Identity:
  • Total samples: 698
  • soil counts: 16
  • aquatic counts: 628
  • animal counts: 27
  • plant counts: 27

Safety information

risk assessment

  • @ref: 1976
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 1976
  • description: T.proteolyticus 16S rRNA
  • accession: X69335
  • length: 1525
  • database: ena
  • NCBI tax ID: 35786

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Coprothermobacter proteolyticus DSM 5265GCA_000020945completencbi309798
66792Coprothermobacter proteolyticus DSM 5265309798.4completepatric309798
66792Coprothermobacter proteolyticus DSM 5265643348530completeimg309798

GC content

  • @ref: 1976
  • GC-content: 45.0

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileyes84.222no
flagellatedno89.957no
gram-positiveno92.515no
anaerobicyes99.518yes
aerobicno98.528no
halophileno94.067no
spore-formingno94.246no
thermophileyes100yes
glucose-utilyes88.697no
glucose-fermentyes66.602no

External links

@ref: 1976

culture collection no.: DSM 5265, ATCC 35245, OCM 4

straininfo link

  • @ref: 85905
  • straininfo: 11089

literature

  • topic: Genetics
  • Pubmed-ID: 24831154
  • title: Complete Genome Sequence of Coprothermobacter proteolyticus DSM 5265.
  • authors: Alexiev A, Coil DA, Badger JH, Enticknap J, Ward N, Robb FT, Eisen JA
  • journal: Genome Announc
  • DOI: 10.1128/genomeA.00470-14
  • year: 2014

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
1976Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 5265)https://www.dsmz.de/collection/catalogue/details/culture/DSM-5265
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updatesNucleic Acids Res. 49: D498-D508 202033211880
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
85905Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID11089.1StrainInfo: A central database for resolving microbial strain identifiers