Strain identifier
BacDive ID: 16888
Type strain: 
Species: Thermococcus celericrescens
Strain Designation: TS2
Strain history: T. Kuwabara TS2.
NCBI tax ID(s): 227598 (species)
version 8.1 (current version)
General
@ref: 7324
BacDive-ID: 16888
DSM-Number: 17994
keywords: genome sequence, 16S sequence, Archaea, hyperthermophilic
description: Thermococcus celericrescens TS2 is a hyperthermophilic archaeon that was isolated from hot water emitted from a casing pipe driven into a hydrothermal site.
NCBI tax id
- NCBI tax id: 227598
- Matching level: species
strain history
| @ref | history |
|---|---|
| 7324 | <- T. Kuwabara; TS2 |
| 67770 | T. Kuwabara TS2. |
doi: 10.13145/bacdive16888.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/archaea
- keyword: phylum/methanobacteriota
- domain: Archaea
- phylum: Methanobacteriota
- class: Thermococci
- order: Thermococcales
- family: Thermococcaceae
- genus: Thermococcus
- species: Thermococcus celericrescens
- full scientific name: Thermococcus celericrescens Kuwabara et al. 2007
@ref: 7324
domain: Archaea
phylum: Euryarchaeota
class: Thermococci
order: Thermococcales
family: Thermococcaceae
genus: Thermococcus
species: Thermococcus celericrescens
full scientific name: Thermococcus celericrescens Kuwabara et al. 2007
strain designation: TS2
type strain: yes
Culture and growth conditions
culture medium
- @ref: 7324
- name: MARINE THERMOCOCCUS MEDIUM (DSMZ Medium 760)
- growth: yes
- link: https://mediadive.dsmz.de/medium/760
- composition: Name: MARINE THERMOCOCCUS MEDIUM (DSMZ Medium 760) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 7324 | positive | growth | 80 | hyperthermophilic |
| 67770 | positive | growth | 80 | hyperthermophilic |
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent | latitude | longitude |
|---|---|---|---|---|---|---|---|
| 7324 | hot water emitted from a casing pipe driven into a hydrothermal site | Western Pacific Ocean, Izu-Bonin Arc, Suiyo Seamount (28°34' N 140°38' E) | Japan | JPN | Asia | 28.5667 | 140.633 |
| 67770 | Hydrothermal vent at Suiyo Seamount | Izu-Bonin Arc | Pacific Ocean |
isolation source categories
| Cat1 | Cat2 |
|---|---|
| #Engineered | #Built environment |
| #Environmental | #Aquatic |
| #Condition | #Thermophilic (>45°C) |
Safety information
risk assessment
- @ref: 7324
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 7324
- description: Thermococcus celericrescens gene for 16S rRNA
- accession: AB107768
- length: 1486
- database: ena
- NCBI tax ID: 227598
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Thermococcus celericrescens DSM 17994 | 2684622662 | draft | img | 227598 |
| 67770 | Thermococcus celericrescens DSM 17994 | GCA_001484195 | contig | ncbi | 227598 |
| 66792 | Thermococcus celericrescens strain DSM 17994 | 227598.4 | wgs | patric | 227598 |
GC content
| @ref | GC-content | method |
|---|---|---|
| 7324 | 54.6 | |
| 67770 | 54.6 | high performance liquid chromatography (HPLC) |
External links
@ref: 7324
culture collection no.: DSM 17994, JCM 13640, NBRC 101555
straininfo link
- @ref: 85894
- straininfo: 297378
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 17329765 | Thermococcus celericrescens sp. nov., a fast-growing and cell-fusing hyperthermophilic archaeon from a deep-sea hydrothermal vent. | Kuwabara T, Minaba M, Ogi N, Kamekura M | Int J Syst Evol Microbiol | 10.1099/ijs.0.64597-0 | 2007 | DNA, Archaeal/genetics, Genes, rRNA, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Temperature, Thermococcus/*classification/genetics/physiology/ultrastructure | Genetics |
| Phylogeny | 32239454 | Thermococcus indicus sp. nov., a Fe(III)-reducing hyperthermophilic archaeon isolated from the Onnuri Vent Field of the Central Indian Ocean ridge. | Lim JK, Kim YJ, Yang JA, Namirimu T, Yang SH, Park MJ, Kwon YM, Lee HS, Kang SG, Lee JH, Kwon KK | J Microbiol | 10.1007/s12275-020-9424-9 | 2020 | Base Composition, DNA, Archaeal/genetics, Ferric Compounds/metabolism, Geologic Sediments/*microbiology, Indian Ocean, *Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Thermococcus/*classification/isolation & purification | Metabolism |
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 7324 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 17994) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-17994 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
| 85894 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID297378.1 | StrainInfo: A central database for resolving microbial strain identifiers |