Strain identifier

BacDive ID: 16887

Type strain: Yes

Species: Thermococcus barossii

Strain Designation: SHCK-94

Strain history: E. V. Pikuta SHCK-94 <-- R. M. Kelly.

NCBI tax ID(s): 54077 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 7215

BacDive-ID: 16887

DSM-Number: 17882

keywords: hyperthermophilic, Archaea, 16S sequence, genome sequence

description: Thermococcus barossii SHCK-94 is a hyperthermophilic archaeon that was isolated from Rock fragments of a hydrothermal vent flange formation.

NCBI tax id

  • NCBI tax id: 54077
  • Matching level: species

strain history

doi: 10.13145/bacdive16887.20220920.7

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/archaea
  • keyword: phylum/euryarchaeota
  • domain: Archaea
  • phylum: Euryarchaeota
  • class: Thermococci
  • order: Thermococcales
  • family: Thermococcaceae
  • genus: Thermococcus
  • species: Thermococcus barossii
  • full scientific name: Thermococcus barossii Duffaud et al. 2005

@ref: 7215

domain: Archaea

phylum: Euryarchaeota

class: Thermococci

order: Thermococcales

family: Thermococcaceae

genus: Thermococcus

species: Thermococcus barossii

full scientific name: Thermococcus barossii Duffaud et al. 2005

strain designation: SHCK-94

type strain: yes

Culture and growth conditions

culture medium

  • @ref: 7215
  • name: MARINE THERMOCOCCUS MEDIUM (DSMZ Medium 760)
  • growth: yes
  • link: https://bacmedia.dsmz.de/medium/760
  • composition: Name: MARINE THERMOCOCCUS MEDIUM (DSMZ Medium 760) Composition: Bacto Marine Broth

culture temp

@refgrowthtypetemperaturerange
7215positivegrowth80hyperthermophilic
67770positivegrowth82hyperthermophilic

Isolation, sampling and environmental information

isolation

@refsample typegeographic location
7215Rock fragments of a hydrothermal vent flange formationnortheast Pacific Ocean, East Pacific Rise of the Juan de Fuca Ridge
67770Rock fragments of a hydrothermal vent flange formation, located along the East Pacific Rise of the Juan de Fuca Ridge

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Hydrothermal vent
#Environmental#Terrestrial#Geologic
#Condition#Thermophilic (>45°C)

Safety information

risk assessment

  • @ref: 7215
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 7215
  • description: Thermococcus barossii 16S ribosomal RNA gene, partial sequence
  • accession: U76535
  • length: 1428
  • database: ena
  • NCBI tax ID: 54077

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Thermococcus barossii SHCK-94GCA_002214465completencbi54077
66792Thermococcus barossii SHCK-942758568026completeimg54077
67770Thermococcus barossii strain SHCK-94, complete genomeCP015101ena54077

GC content

@refGC-contentmethod
721560.0high performance liquid chromatography (HPLC)
6777060high performance liquid chromatography (HPLC)

External links

@ref: 7215

culture collection no.: DSM 17882, ATCC BAA 1085, JCM 12858, DSM 9535

straininfo link

@refpassport
20218http://www.straininfo.net/strains/692228
20218http://www.straininfo.net/strains/386640
20218http://www.straininfo.net/strains/386641

literature

  • topic: Phylogeny
  • Pubmed-ID: 27638197
  • title: Thermococcus piezophilus sp. nov., a novel hyperthermophilic and piezophilic archaeon with a broad pressure range for growth, isolated from a deepest hydrothermal vent at the Mid-Cayman Rise.
  • authors: Dalmasso C, Oger P, Selva G, Courtine D, L'Haridon S, Garlaschelli A, Roussel E, Miyazaki J, Reveillaud J, Jebbar M, Takai K, Maignien L, Alain K
  • journal: Syst Appl Microbiol
  • DOI: 10.1016/j.syapm.2016.08.003
  • year: 2016
  • mesh: Base Composition/genetics, Base Sequence, DNA, Archaeal/genetics, Genome, Bacterial/genetics, Hot Temperature, Hydrothermal Vents/*microbiology, Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/microbiology, Sequence Analysis, DNA, Sulfur Compounds/*metabolism, Thermococcus/genetics/*growth & development/isolation & purification/*metabolism, Thermotolerance/*physiology, West Indies
  • topic2: Genetics

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
7215Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 17882)https://www.dsmz.de/collection/catalogue/details/culture/DSM-17882
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/