Strain identifier
BacDive ID: 16886
Type strain: 
Species: Thermococcus coalescens
Strain Designation: TS1
Strain history: T. Kuwabara TS1.
NCBI tax ID(s): 227597 (species)
version 8.1 (current version)
General
@ref: 6476
BacDive-ID: 16886
DSM-Number: 16538
keywords: 16S sequence, Archaea, hyperthermophilic
description: Thermococcus coalescens TS1 is a hyperthermophilic archaeon that was isolated from hydrothermal vent fluid.
NCBI tax id
- NCBI tax id: 227597
- Matching level: species
strain history
| @ref | history |
|---|---|
| 6476 | <- T. Kuwabara, Graduate School Life and Environmental Sci., Univ. Tsukuba; TS1 |
| 67770 | T. Kuwabara TS1. |
doi: 10.13145/bacdive16886.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/archaea
- keyword: phylum/methanobacteriota
- domain: Archaea
- phylum: Methanobacteriota
- class: Thermococci
- order: Thermococcales
- family: Thermococcaceae
- genus: Thermococcus
- species: Thermococcus coalescens
- full scientific name: Thermococcus coalescens Kuwabara et al. 2005
@ref: 6476
domain: Archaea
phylum: Euryarchaeota
class: Thermococci
order: Thermococcales
family: Thermococcaceae
genus: Thermococcus
species: Thermococcus coalescens
full scientific name: Thermococcus coalescens Kuwabara et al. 2005
strain designation: TS1
type strain: yes
Culture and growth conditions
culture medium
- @ref: 6476
- name: MARINE THERMOCOCCUS MEDIUM (DSMZ Medium 760)
- growth: yes
- link: https://mediadive.dsmz.de/medium/760
- composition: Name: MARINE THERMOCOCCUS MEDIUM (DSMZ Medium 760) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 6476 | positive | growth | 90 | hyperthermophilic |
| 67770 | positive | growth | 85 | hyperthermophilic |
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent | latitude | longitude |
|---|---|---|---|---|---|---|---|
| 6476 | hydrothermal vent fluid | Suiyo Seamount (28° 34' 17'' N 140° 38' 38'' E) at a depth of 1380 m | Japan | JPN | Asia | 28.5714 | 140.644 |
| 67770 | Hydrothermal fluid from Suiyo Seamount | Izu-Bonin Arc | Pacific Ocean |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Hydrothermal vent |
| #Condition | #Thermophilic (>45°C) |
Safety information
risk assessment
- @ref: 6476
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 6476
- description: Thermococcus coalescens gene for 16S rRNA
- accession: AB107767
- length: 1489
- database: ena
- NCBI tax ID: 227597
GC content
| @ref | GC-content | method |
|---|---|---|
| 6476 | 53.9 | |
| 67770 | 53.9 | high performance liquid chromatography (HPLC) |
External links
@ref: 6476
culture collection no.: DSM 16538, JCM 12540
straininfo link
- @ref: 85892
- straininfo: 281470
literature
- topic: Phylogeny
- Pubmed-ID: 16280518
- title: Thermococcus coalescens sp. nov., a cell-fusing hyperthermophilic archaeon from Suiyo Seamount.
- authors: Kuwabara T, Minaba M, Iwayama Y, Inouye I, Nakashima M, Marumo K, Maruyama A, Sugai A, Itoh T, Ishibashi JI, Urabe T, Kamekura M
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.63432-0
- year: 2005
- mesh: Base Composition, DNA, Archaeal/analysis/chemistry/genetics, DNA, Ribosomal/genetics, Molecular Sequence Data, Phylogeny, Seawater/microbiology, Temperature, Thermococcus/classification/genetics/*isolation & purification/ultrastructure
- topic2: Genetics
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 6476 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 16538) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-16538 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
| 85892 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID281470.1 | StrainInfo: A central database for resolving microbial strain identifiers |