Strain identifier
BacDive ID: 16882
Type strain: 
Species: Thermococcus atlanticus
Strain Designation: MA898
Strain history: M.-A. Cambon-Bonavita MA898.
NCBI tax ID(s): 155321 (species)
version 8.1 (current version)
General
@ref: 5766
BacDive-ID: 16882
DSM-Number: 15226
keywords: 16S sequence, Archaea, anaerobe, hyperthermophilic
description: Thermococcus atlanticus MA898 is an anaerobe, hyperthermophilic archaeon that was isolated from hydrothermal sample, Blacksmoker.
NCBI tax id
- NCBI tax id: 155321
- Matching level: species
strain history
| @ref | history |
|---|---|
| 5766 | <- E. Sargenton, IFREMER; MA898 <- F. Lesongeur |
| 67770 | M.-A. Cambon-Bonavita MA898. |
doi: 10.13145/bacdive16882.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/archaea
- keyword: phylum/methanobacteriota
- domain: Archaea
- phylum: Methanobacteriota
- class: Thermococci
- order: Thermococcales
- family: Thermococcaceae
- genus: Thermococcus
- species: Thermococcus atlanticus
- full scientific name: Thermococcus atlanticus Cambon-Bonavita et al. 2004
@ref: 5766
domain: Archaea
phylum: Euryarchaeota
class: Thermococci
order: Thermococcales
family: Thermococcaceae
genus: Thermococcus
species: Thermococcus atlanticus
full scientific name: Thermococcus atlanticus Cambon-Bonavita et al. 2004
strain designation: MA898
type strain: yes
Culture and growth conditions
culture medium
- @ref: 5766
- name: MARINE THERMOCOCCUS MEDIUM (DSMZ Medium 760)
- growth: yes
- link: https://mediadive.dsmz.de/medium/760
- composition: Name: MARINE THERMOCOCCUS MEDIUM (DSMZ Medium 760) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 5766 | positive | growth | 85 | hyperthermophilic |
| 67770 | positive | growth | 85 | hyperthermophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 5766
- oxygen tolerance: anaerobe
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location |
|---|---|---|
| 5766 | hydrothermal sample, Blacksmoker | Mid Atlantic Ridge, TAG (26°N) |
| 67770 | Deep-sea hydrothermal vent on the Mid-Atlantic Ridge |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Hydrothermal vent |
| #Condition | #Thermophilic (>45°C) |
taxonmaps
- @ref: 69479
- File name: preview.99_192863.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_17827;96_68785;97_89427;98_121709;99_192863&stattab=map
- Last taxonomy: Thermococcus
- 16S sequence: AJ310754
- Sequence Identity:
- Total samples: 6
- aquatic counts: 6
Safety information
risk assessment
- @ref: 5766
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 5766
- description: Thermococcus atlantis 16S rRNA gene, strain MA898
- accession: AJ310754
- length: 1844
- database: ena
- NCBI tax ID: 155321
GC content
| @ref | GC-content | method |
|---|---|---|
| 5766 | 50 | |
| 67770 | 50 | thermal denaturation, midpoint method (Tm) |
External links
@ref: 5766
culture collection no.: DSM 15226, CIP 107420, JCM 16138
straininfo link
- @ref: 85890
- straininfo: 134310
literature
- topic: Phylogeny
- Pubmed-ID: 12664262
- title: Thermococcus atlanticus sp nov., a hyperthermophilic Archaeon isolated from a deep-sea hydrothermal vent in the Mid-Atlantic Ridge [corrected].
- authors: Cambon-Bonavita MA, Lesongeur F, Pignet P, Wery N, Lambert C, Godfroy A, Querellou J, Barbier G
- journal: Extremophiles
- DOI: 10.1007/s00792-002-0301-8
- year: 2002
- mesh: Atlantic Ocean, Base Composition, DNA, Archaeal/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Microscopy, Electron, Scanning, Molecular Sequence Data, Phylogeny, RNA, Archaeal/genetics, RNA, Ribosomal, 16S/genetics, Seawater/microbiology, Species Specificity, Temperature, Thermococcus/classification/genetics/*isolation & purification/metabolism
- topic2: Genetics
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 5766 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 15226) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-15226 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
| 85890 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID134310.1 | StrainInfo: A central database for resolving microbial strain identifiers |