Strain identifier
BacDive ID: 16880
Type strain: 
Species: Thermococcus sibiricus
Strain Designation: MM 739, B-2774
Strain history: <- E. A. Bonch-Osmolovskaya, Russian Academy of Sciences, Inst. of Microbiology, Moscow; MM 739
NCBI tax ID(s): 172049 (species)
version 8.1 (current version)
General
@ref: 4769
BacDive-ID: 16880
DSM-Number: 12597
keywords: genome sequence, 16S sequence, Archaea, anaerobe, thermophilic
description: Thermococcus sibiricus MM 739 is an anaerobe, thermophilic archaeon that was isolated from formation water, high temperature Samoltor oil reservoir.
NCBI tax id
- NCBI tax id: 172049
- Matching level: species
strain history
- @ref: 4769
- history: <- E. A. Bonch-Osmolovskaya, Russian Academy of Sciences, Inst. of Microbiology, Moscow; MM 739
doi: 10.13145/bacdive16880.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/archaea
- keyword: phylum/methanobacteriota
- domain: Archaea
- phylum: Methanobacteriota
- class: Thermococci
- order: Thermococcales
- family: Thermococcaceae
- genus: Thermococcus
- species: Thermococcus sibiricus
- full scientific name: Thermococcus sibiricus Miroshnichenko et al. 2001
@ref: 4769
domain: Archaea
phylum: Euryarchaeota
class: Thermococci
order: Thermococcales
family: Thermococcaceae
genus: Thermococcus
species: Thermococcus sibiricus
full scientific name: Thermococcus sibiricus Miroshnichenko et al. 2001
strain designation: MM 739, B-2774
type strain: yes
Culture and growth conditions
culture medium
- @ref: 4769
- name: MARINE THERMOCOCCUS MEDIUM (DSMZ Medium 760)
- growth: yes
- link: https://mediadive.dsmz.de/medium/760
- composition: Name: MARINE THERMOCOCCUS MEDIUM (DSMZ Medium 760) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
culture temp
- @ref: 4769
- growth: positive
- type: growth
- temperature: 78
- range: thermophilic
Physiology and metabolism
oxygen tolerance
- @ref: 4769
- oxygen tolerance: anaerobe
Isolation, sampling and environmental information
isolation
- @ref: 4769
- sample type: formation water, high temperature Samoltor oil reservoir
- geographic location: Western Siberia
- country: Russia
- origin.country: RUS
- continent: Asia
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Engineered | #Industrial | #Oil reservoir |
| #Environmental | #Aquatic | |
| #Condition | #Thermophilic (>45°C) |
Safety information
risk assessment
- @ref: 4769
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 4769
- description: Thermococcus sibiricus partial 16S rRNA gene for 16S ribosomal RNA
- accession: AJ238992
- length: 1305
- database: ena
- NCBI tax ID: 604354
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Thermococcus sibiricus MM 739 | GCA_000022545 | complete | ncbi | 604354 |
| 66792 | Thermococcus sibiricus MM 739 | 644736412 | complete | img | 604354 |
| 66792 | Thermococcus sibiricus MM 739 | 604354.9 | complete | patric | 604354 |
GC content
- @ref: 4769
- GC-content: 38.4
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | no | 77.026 | no |
| flagellated | no | 97.072 | no |
| gram-positive | no | 96.065 | no |
| anaerobic | yes | 98.28 | yes |
| aerobic | no | 97.365 | yes |
| halophile | no | 67.905 | no |
| spore-forming | no | 97.491 | no |
| glucose-util | yes | 80.814 | no |
| thermophile | yes | 99.999 | yes |
| glucose-ferment | no | 61.514 | no |
External links
@ref: 4769
culture collection no.: DSM 12597
straininfo link
- @ref: 85888
- straininfo: 49330
literature
- topic: Phylogeny
- Pubmed-ID: 11354459
- title: Isolation and characterization of Thermococcus sibiricus sp. nov. from a Western Siberia high-temperature oil reservoir.
- authors: Miroshnichenko ML, Hippe H, Stackebrandt E, Kostrikina NA, Chernyh NA, Jeanthon C, Nazina TN, Belyaev SS, Bonch-Osmolovskaya EA
- journal: Extremophiles
- DOI: 10.1007/s007920100175
- year: 2001
- mesh: DNA, Archaeal/genetics, DNA, Ribosomal/genetics, *Hot Temperature, Nucleic Acid Hybridization, *Petroleum, Phylogeny, RNA, Ribosomal, 16S/genetics, Siberia, Thermococcus/classification/genetics/*isolation & purification
- topic2: Stress
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 4769 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 12597) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-12597 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 85888 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID49330.1 | StrainInfo: A central database for resolving microbial strain identifiers |