Strain identifier

BacDive ID: 1688

Type strain: Yes

Species: Bifidobacterium asteroides

Strain Designation: C51

Strain history: DSM 20089 <-- ATCC 25910 <-- V. Scardovi C51.

NCBI tax ID(s): 1437594 (strain), 1684 (species)

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General

@ref: 8515

BacDive-ID: 1688

DSM-Number: 20089

keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic

description: Bifidobacterium asteroides C51 is an anaerobe, mesophilic bacterium that was isolated from hindgut of honeybee.

NCBI tax id

NCBI tax idMatching level
1437594strain
1684species

strain history

@refhistory
8515<- ATCC <- V. Scardovi, C51
67770DSM 20089 <-- ATCC 25910 <-- V. Scardovi C51.

doi: 10.13145/bacdive1688.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Bifidobacteriales
  • family: Bifidobacteriaceae
  • genus: Bifidobacterium
  • species: Bifidobacterium asteroides
  • full scientific name: Bifidobacterium asteroides Scardovi and Trovatelli 1969 (Approved Lists 1980)

@ref: 8515

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Bifidobacteriales

family: Bifidobacteriaceae

genus: Bifidobacterium

species: Bifidobacterium asteroides

full scientific name: Bifidobacterium asteroides Scardovi and Trovatelli 1969 emend. Nouioui et al. 2018

strain designation: C51

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram stain
69480no93.334
69480100positive

colony morphology

  • @ref: 47993
  • incubation period: 2 days

Culture and growth conditions

culture medium

  • @ref: 8515
  • name: BIFIDOBACTERIUM MEDIUM (DSMZ Medium 58)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/58
  • composition: Name: BIFIDOBACTERIUM MEDIUM (DSMZ Medium 58) Composition: Glucose 10.0 g/l Casein peptone 10.0 g/l Bacto Soytone 5.0 g/l Meat extract 5.0 g/l Yeast extract 5.0 g/l L-Cysteine HCl x H2O 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l MnSO4 x H2O 0.05 g/l KH2PO4 0.04 g/l K2HPO4 0.04 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l Tween 80 Resazurin Distilled water

culture temp

@refgrowthtypetemperaturerange
8515positivegrowth37mesophilic
67770positivegrowth37mesophilic

Physiology and metabolism

oxygen tolerance

@refoxygen toleranceconfidence
8515anaerobe
47993anaerobe
69480anaerobe99.702

spore formation

  • @ref: 69480
  • spore formation: no
  • confidence: 99.996

murein

  • @ref: 8515
  • murein short key: A11.01
  • type: A3alpha L-Lys-Gly

Isolation, sampling and environmental information

isolation

@refsample typesampling date
8515hindgut of honeybee
47993Hindgut of honeybee1989-05-02
67770Hindgut of honeybee

isolation source categories

Cat1Cat2Cat3
#Host#Arthropoda#Insecta
#Host Body-Site#Gastrointestinal tract

taxonmaps

  • @ref: 69479
  • File name: preview.99_2788.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_24;96_1481;97_1767;98_2161;99_2788&stattab=map
  • Last taxonomy: Bifidobacterium asteroides
  • 16S sequence: LC071851
  • Sequence Identity:
  • Total samples: 35418
  • soil counts: 331
  • aquatic counts: 742
  • animal counts: 33983
  • plant counts: 362

Safety information

risk assessment

  • @ref: 8515
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Bifidobacterium asteroides 16S ribosomal RNAM587301468ena1684
20218Bifidobacterium asteroides ATCC25910 16S-23S intergenic spacerU09516452ena1684
20218Bifidobacterium asteroides strain CCUG 24607 16S ribosomal RNA gene, partial sequenceEF1872351369ena1684
20218Bifidobacterium asteroides gene for 16S rRNA, partial sequence, strain: JCM 8230AB116280475ena1684
20218Bifidobacterium asteroides gene for 16S rRNA, partial sequence, strain: JCM 8230AB507075645ena1684
67770Bifidobacterium asteroides gene for 16S ribosomal RNA, partial sequenceAB4373551507ena1684
67770Bifidobacterium asteroides gene for 16S ribosomal RNA, partial sequence, strain: JCM 8230LC0718511464ena1684

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Bifidobacterium asteroides DSM 20089GCA_002715865completencbi1437594
66792Bifidobacterium asteroides DSM 200891437594.4completepatric1437594
66792Bifidobacterium asteroides DSM 200891437594.3wgspatric1437594
66792Bifidobacterium asteroides strain DSM 200891684.12plasmidpatric1684
66792Bifidobacterium asteroides DSM 200892671180601draftimg1437594
66792Bifidobacterium asteroides ATCC 259102513237174completeimg1684
67770Bifidobacterium asteroides DSM 20089GCA_000771125contigncbi1437594

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno88no
flagellatedno97.98no
gram-positiveyes94.367no
anaerobicyes94.951yes
aerobicno96.234yes
halophileyes50.759no
spore-formingno95.756no
glucose-utilyes86.188no
thermophileno92.784yes
motileno94.298no
glucose-fermentyes80.234no

External links

@ref: 8515

culture collection no.: DSM 20089, ATCC 25910, JCM 8230, CCUG 24607, BCRC 14659, CGMCC 1.2266, KCTC 3271, LMG 10735

straininfo link

  • @ref: 71335
  • straininfo: 1237

literature

  • topic: Phylogeny
  • Pubmed-ID: 35608970
  • title: Bifidobacterium mizhiense sp. nov., isolated from the gut of honeybee (Apis mellifera).
  • authors: Li TT, Zhang HX, Gu CT
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.005390
  • year: 2022
  • mesh: Animals, Bacterial Typing Techniques, Base Composition, Bees, Bifidobacterium, DNA, Bacterial/genetics, Fatty Acids/chemistry, Genes, Bacterial, Maltose, *Mannose, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sucrose, *alpha-L-Fucosidase/genetics
  • topic2: Transcriptome

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
8515Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 20089)https://www.dsmz.de/collection/catalogue/details/culture/DSM-20089
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
47993Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 24607)https://www.ccug.se/strain?id=24607
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
71335Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID1237.1StrainInfo: A central database for resolving microbial strain identifiers