Strain identifier

BacDive ID: 168738

Type strain: Yes

Species: Acholeplasma axanthum

Strain Designation: S-743

NCBI tax ID(s): 29552 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 20215

BacDive-ID: 168738

keywords: genome sequence, 16S sequence, Bacteria, animal pathogen

description: Acholeplasma axanthum S-743 is an animal pathogen of the family Acholeplasmataceae.

NCBI tax id

  • NCBI tax id: 29552
  • Matching level: species

doi: 10.13145/bacdive168738.20240916.9.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/mycoplasmatota
  • domain: Bacteria
  • phylum: Mycoplasmatota
  • class: Mollicutes
  • order: Acholeplasmatales
  • family: Acholeplasmataceae
  • genus: Acholeplasma
  • species: Acholeplasma axanthum
  • full scientific name: Acholeplasma axanthum Tully and Razin 1970 (Approved Lists 1980)
  • synonyms

    • @ref: 20215
    • synonym: Haploplasma axanthum

@ref: 20215

domain: Bacteria

phylum: Mycoplasmatota

class: Mollicutes

order: Acholeplasmatales

family: Acholeplasmataceae

genus: Acholeplasma

species: Acholeplasma axanthum

full scientific name: Acholeplasma axanthum Tully and Razin 1970 (Approved Lists 1980)

strain designation: S-743

type strain: yes

Morphology

cell morphology

  • @ref: 69480
  • motility: no
  • confidence: 93.455

Isolation, sampling and environmental information

taxonmaps

  • @ref: 69479
  • File name: preview.99_7070.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_622;96_3315;97_4065;98_5196;99_7070&stattab=map
  • Last taxonomy: Acholeplasma axanthum subclade
  • 16S sequence: AF412968
  • Sequence Identity:
  • Total samples: 1732
  • soil counts: 110
  • aquatic counts: 165
  • animal counts: 1393
  • plant counts: 64

Safety information

risk assessment

  • @ref: 20215
  • pathogenicity animal: yes
  • biosafety level: 2
  • biosafety level comment: Risk group

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20215Acholeplasma axanthum 16S ribosomal RNA gene, partial sequenceAF4129681463nuccore29552
124043Acholeplasma axanthum 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence.AY786573771nuccore29552

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Haploplasma axanthum ATCC 25176GCA_000428705scaffoldncbi1278311
66792Haploplasma axanthum NCTC10138GCA_900660745completencbi29552
66792Acholeplasma axanthum strain NCTC1013829552.8completepatric29552
66792Acholeplasma axanthum ATCC 251761278311.3wgspatric1278311

Genome-based predictions

predictions

@reftraitmodeldescriptionpredictionconfidencetraining_data
69480gram-positivegram-positivePositive reaction to Gram-stainingyes67.472no
69480anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)no71.263no
69480aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)no94.034no
69480spore-formingspore-formingAbility to form endo- or exosporesno84.166no
69480thermophilicthermophileAbility to grow at temperatures above or equal to 45°Cno97.79no
69480flagellatedmotile2+Ability to perform flagellated movementno93.455no

External links

@ref: 20215

culture collection no.: ATCC 25176, NCTC 10138

straininfo link

  • @ref: 115251
  • straininfo: 38394

Reference

@idauthorstitledoi/url
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
115251Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID38394.1
124043Dr. Isabel Schober, Dr. Julia KoblitzData extracted from sequence databases, automatically matched based on designation and taxonomy