Strain identifier
BacDive ID: 168738
Type strain: 
Species: Acholeplasma axanthum
Strain Designation: S-743
NCBI tax ID(s): 29552 (species)
version 9.3 (current version)
General
@ref: 20215
BacDive-ID: 168738
keywords: genome sequence, 16S sequence, Bacteria, animal pathogen
description: Acholeplasma axanthum S-743 is an animal pathogen of the family Acholeplasmataceae.
NCBI tax id
- NCBI tax id: 29552
- Matching level: species
doi: 10.13145/bacdive168738.20250331.9.3
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/mycoplasmatota
- domain: Bacteria
- phylum: Mycoplasmatota
- class: Mollicutes
- order: Acholeplasmatales
- family: Acholeplasmataceae
- genus: Acholeplasma
- species: Acholeplasma axanthum
- full scientific name: Acholeplasma axanthum Tully and Razin 1970 (Approved Lists 1980)
synonyms
- @ref: 20215
- synonym: Haploplasma axanthum
@ref: 20215
domain: Bacteria
phylum: Mycoplasmatota
class: Mollicutes
order: Acholeplasmatales
family: Acholeplasmataceae
genus: Acholeplasma
species: Acholeplasma axanthum
full scientific name: Acholeplasma axanthum Tully and Razin 1970 (Approved Lists 1980)
strain designation: S-743
type strain: yes
Morphology
cell morphology
- @ref: 125438
- motility: no
- confidence: 93.455
Isolation, sampling and environmental information
taxonmaps
- @ref: 69479
- File name: preview.99_7070.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_622;96_3315;97_4065;98_5196;99_7070&stattab=map
- Last taxonomy: Acholeplasma axanthum subclade
- 16S sequence: AF412968
- Sequence Identity:
- Total samples: 1732
- soil counts: 110
- aquatic counts: 165
- animal counts: 1393
- plant counts: 64
Safety information
risk assessment
- @ref: 20215
- pathogenicity animal: yes
- biosafety level: 2
- biosafety level comment: Risk group
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20215 | Acholeplasma axanthum 16S ribosomal RNA gene, partial sequence | AF412968 | 1463 | nuccore | 29552 |
| 124043 | Acholeplasma axanthum 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence. | AY786573 | 771 | nuccore | 29552 |
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Haploplasma axanthum ATCC 25176 | GCA_000428705 | scaffold | ncbi | 1278311 |
| 66792 | Haploplasma axanthum NCTC10138 | GCA_900660745 | complete | ncbi | 29552 |
| 66792 | Acholeplasma axanthum strain NCTC10138 | 29552.8 | complete | patric | 29552 |
| 66792 | Acholeplasma axanthum ATCC 25176 | 1278311.3 | wgs | patric | 1278311 |
Genome-based predictions
predictions
| @ref | model | trait | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 125439 | BacteriaNet | oxygen_tolerance | Oxygenic conditions needed for growth | facultative anaerobe | 89 | |
| 125439 | BacteriaNet | gram_stain | Reaction to gram-staining | positive | 80.7 | |
| 125439 | BacteriaNet | motility | Ability to perform movement | yes | 74.5 | |
| 125439 | BacteriaNet | spore_formation | Ability to form endo- or exospores | yes | 70 | |
| 125438 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 67.472 | no |
| 125438 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 71.263 | no |
| 125438 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | no | 94.034 | no |
| 125438 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 84.166 | no |
| 125438 | thermophile | thermophilic | Ability to grow at temperatures above or equal to 45°C | no | 97.79 | no |
| 125438 | motile2+ | flagellated | Ability to perform flagellated movement | no | 93.455 | no |
External links
@ref: 20215
culture collection no.: ATCC 25176, NCTC 10138
straininfo link
- @ref: 115251
- straininfo: 38394
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |
| 115251 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID38394.1 |
| 124043 | Isabel Schober, Julia Koblitz | Data extracted from sequence databases, automatically matched based on designation and taxonomy | |
| 125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann | Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets | 10.1101/2024.08.12.607695 |
| 125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy | deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 | https://github.com/GenomeNet/deepG |