Strain identifier
BacDive ID: 16870
Type strain: 
Species: Thermococcus acidaminovorans
Strain Designation: AED II 10
Strain history: <- R. Dirmeier and K. O. Stetter; AED II 10
NCBI tax ID(s): 71280 (species)
version 8.1 (current version)
General
@ref: 4534
BacDive-ID: 16870
DSM-Number: 11906
keywords: 16S sequence, Archaea, anaerobe, hyperthermophilic
description: Thermococcus acidaminovorans AED II 10 is an anaerobe, hyperthermophilic archaeon that was isolated from shallow beach .
NCBI tax id
- NCBI tax id: 71280
- Matching level: species
strain history
- @ref: 4534
- history: <- R. Dirmeier and K. O. Stetter; AED II 10
doi: 10.13145/bacdive16870.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/archaea
- keyword: phylum/methanobacteriota
- domain: Archaea
- phylum: Methanobacteriota
- class: Thermococci
- order: Thermococcales
- family: Thermococcaceae
- genus: Thermococcus
- species: Thermococcus acidaminovorans
- full scientific name: Thermococcus acidaminovorans Dirmeier et al. 2001
@ref: 4534
domain: Archaea
phylum: Euryarchaeota
class: Thermococci
order: Thermococcales
family: Thermococcaceae
genus: Thermococcus
species: Thermococcus acidaminovorans
full scientific name: Thermococcus acidaminovorans Dirmeier et al. 2001
strain designation: AED II 10
type strain: yes
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 4534 | ALKALIPHILIC THERMOCOCCUS MEDIUM (DSMZ Medium 926) | yes | https://mediadive.dsmz.de/medium/926 | Name: ALKALIPHILIC THERMOCOCCUS MEDIUM (DSMZ Medium 926) Composition: MgCl2 x 6 H2O 2.75 g/l K2HPO4 0.5 g/l KCl 0.325 g/l NaHCO3 0.16 g/l NaBr 0.05 g/l MgSO4 x 7 H2O 0.03 g/l Nitrilotriacetic acid 0.015 g/l H3BO3 0.015 g/l NaCl 0.01 g/l KI 0.0075 g/l MnSO4 x H2O 0.005 g/l CoSO4 x 7 H2O 0.0018 g/l ZnSO4 x 7 H2O 0.0018 g/l FeSO4 x 7 H2O 0.001 g/l CaCl2 x 2 H2O 0.001 g/l NiCl2 x 6 H2O 0.0003 g/l AlK(SO4)2 x 12 H2O 0.0002 g/l CuSO4 x 5 H2O 0.0001 g/l Na2MoO4 x 2 H2O 0.0001 g/l Na2WO4 x 2 H2O 4e-06 g/l Na2SeO3 x 5 H2O 3e-06 g/l Distilled water |
| 4534 | MARINE THERMOCOCCUS MEDIUM (DSMZ Medium 760) | yes | https://mediadive.dsmz.de/medium/760 | Name: MARINE THERMOCOCCUS MEDIUM (DSMZ Medium 760) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water |
culture temp
- @ref: 4534
- growth: positive
- type: growth
- temperature: 85
- range: hyperthermophilic
Physiology and metabolism
oxygen tolerance
- @ref: 4534
- oxygen tolerance: anaerobe
Isolation, sampling and environmental information
isolation
- @ref: 4534
- sample type: shallow beach (depth 1.0 m)
- geographic location: Vulcano Island, porto di Levante
- country: Italy
- origin.country: ITA
- continent: Europe
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Coast
taxonmaps
- @ref: 69479
- File name: preview.99_191242.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_17916;96_69485;97_90251;98_122786;99_191242&stattab=map
- Last taxonomy: Thermococcus
- 16S sequence: AJ291807
- Sequence Identity:
- Total samples: 4
- aquatic counts: 4
Safety information
risk assessment
- @ref: 4534
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | Thermococcus acidaminovorans 16S rRNA gene | Y15935 | 1427 | ena | 71280 |
| 20218 | Thermococcus acidaminovorans gene for 16S rRNA, partial sequence, strain:DSM 11906 | AB055120 | 1426 | ena | 71280 |
| 20218 | Thermococcus acidaminovorans 16S rRNA gene, strain DSM 11906 | AJ291807 | 1317 | ena | 71280 |
| 20218 | Thermococcus acidaminovorans strain DSM 11906 16S ribosomal RNA gene, partial sequence | AY099170 | 1384 | ena | 71280 |
| 20218 | Thermococcus acidaminovorans strain DSM 11906 16S-23S ribosomal RNA intergenic spacer region, complete sequence | AY099206 | 182 | ena | 71280 |
GC content
- @ref: 4534
- GC-content: 49
External links
@ref: 4534
culture collection no.: DSM 11906, JCM 12186
straininfo link
- @ref: 85878
- straininfo: 101003
literature
- topic: Phylogeny
- Pubmed-ID: 9672685
- title: Thermococcus acidaminovorans sp. nov., a new hyperthermophilic alkalophilic archaeon growing on amino acids.
- authors: Dirmeier R, Keller M, Hafenbradl D, Braun FJ, Rachel R, Burggraf S, Stetter KO
- journal: Extremophiles
- DOI: 10.1007/s007920050049
- year: 1998
- mesh: Amino Acids, DNA, Archaeal/analysis, Hydrogen-Ion Concentration, Temperature, Thermococcus/classification/*growth & development/*isolation & purification
- topic2: Enzymology
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 4534 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 11906) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-11906 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 85878 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID101003.1 | StrainInfo: A central database for resolving microbial strain identifiers |