Strain identifier
BacDive ID: 16869
Type strain: 
Species: Thermococcus barophilus
Strain Designation: MP
Strain history: <- V. T. Marteinsson; MP
NCBI tax ID(s): 391623 (strain), 55802 (species)
version 8.1 (current version)
General
@ref: 4508
BacDive-ID: 16869
DSM-Number: 11836
keywords: genome sequence, 16S sequence, Archaea, anaerobe, hyperthermophilic
description: Thermococcus barophilus MP is an anaerobe, hyperthermophilic archaeon that was isolated from chimmney wall of a deep-sea hydrothermal vent .
NCBI tax id
| NCBI tax id | Matching level |
|---|---|
| 55802 | species |
| 391623 | strain |
strain history
- @ref: 4508
- history: <- V. T. Marteinsson; MP
doi: 10.13145/bacdive16869.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/archaea
- keyword: phylum/methanobacteriota
- domain: Archaea
- phylum: Methanobacteriota
- class: Thermococci
- order: Thermococcales
- family: Thermococcaceae
- genus: Thermococcus
- species: Thermococcus barophilus
- full scientific name: Thermococcus barophilus Marteinsson et al. 1999
@ref: 4508
domain: Archaea
phylum: Euryarchaeota
class: Thermococci
order: Thermococcales
family: Thermococcaceae
genus: Thermococcus
species: Thermococcus barophilus
full scientific name: Thermococcus barophilus Marteinsson et al. 1999
strain designation: MP
type strain: yes
Culture and growth conditions
culture medium
- @ref: 4508
- name: MARINE THERMOCOCCUS MEDIUM (DSMZ Medium 760)
- growth: yes
- link: https://mediadive.dsmz.de/medium/760
- composition: Name: MARINE THERMOCOCCUS MEDIUM (DSMZ Medium 760) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
culture temp
- @ref: 4508
- growth: positive
- type: growth
- temperature: 85
- range: hyperthermophilic
Physiology and metabolism
oxygen tolerance
- @ref: 4508
- oxygen tolerance: anaerobe
Isolation, sampling and environmental information
isolation
- @ref: 4508
- sample type: chimmney wall of a deep-sea hydrothermal vent (3600 m)
- geographic location: mid-Atlantic Ridge, Snake Pit
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Hydrothermal vent |
| #Environmental | #Aquatic | #Thermal spring |
| #Condition | #Thermophilic (>45°C) |
Safety information
risk assessment
- @ref: 4508
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | Thermococcus barophilus strain DSM 11836 16S ribosomal RNA gene, partial sequence | AY099172 | 1451 | ena | 391623 |
| 20218 | Thermococcus barophilus strain DSM 11836 16S-23S ribosomal RNA intergenic spacer region, complete sequence | AY099208 | 182 | ena | 391623 |
| 4508 | Thermococcus barophilus strain MP 16S ribosomal RNA gene, partial sequence | U82237 | 1396 | ena | 55802 |
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Thermococcus barophilus MP | GCA_000151105 | complete | ncbi | 391623 |
| 66792 | Thermococcus barophilus MP, DSM 11836 | 650716096 | complete | img | 391623 |
| 66792 | Thermococcus barophilus MP | 391623.23 | plasmid | patric | 391623 |
| 66792 | Thermococcus barophilus MP | 391623.17 | complete | patric | 391623 |
GC content
- @ref: 4508
- GC-content: 37.1
- method: thermal denaturation, midpoint method (Tm)
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | no | 84.564 | no |
| flagellated | no | 97.368 | no |
| gram-positive | no | 95.61 | no |
| anaerobic | yes | 99.062 | yes |
| aerobic | no | 97.784 | yes |
| halophile | no | 77.302 | no |
| spore-forming | no | 96.728 | no |
| thermophile | yes | 100 | yes |
| glucose-util | yes | 79.361 | no |
| glucose-ferment | no | 63.973 | no |
External links
@ref: 4508
culture collection no.: DSM 11836
straininfo link
- @ref: 85877
- straininfo: 49188
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 4508 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 11836) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-11836 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 85877 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID49188.1 | StrainInfo: A central database for resolving microbial strain identifiers |