Strain identifier
BacDive ID: 16866
Type strain: 
Species: Thermococcus chitonophagus
Strain Designation: GC 74
Strain history: <- K. O. Stetter
NCBI tax ID(s): 54262 (species)
version 8.1 (current version)
General
@ref: 3823
BacDive-ID: 16866
DSM-Number: 10152
keywords: genome sequence, 16S sequence, Archaea, hyperthermophilic
description: Thermococcus chitonophagus GC 74 is a hyperthermophilic archaeon that was isolated from deep-sea hydrothermal vent.
NCBI tax id
- NCBI tax id: 54262
- Matching level: species
strain history
- @ref: 3823
- history: <- K. O. Stetter
doi: 10.13145/bacdive16866.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/archaea
- keyword: phylum/methanobacteriota
- domain: Archaea
- phylum: Methanobacteriota
- class: Thermococci
- order: Thermococcales
- family: Thermococcaceae
- genus: Thermococcus
- species: Thermococcus chitonophagus
- full scientific name: Thermococcus chitonophagus Huber and Stetter 1996
synonyms
- @ref: 20215
- synonym: Pyrococcus chitonophagus
@ref: 3823
domain: Archaea
phylum: Euryarchaeota
class: Thermococci
order: Thermococcales
family: Thermococcaceae
genus: Thermococcus
species: Thermococcus chitonophagus
full scientific name: Thermococcus chitonophagus Huber and Stetter 1996
strain designation: GC 74
type strain: yes
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 3823 | MARINE THERMOCOCCUS MEDIUM (DSMZ Medium 760) | yes | https://mediadive.dsmz.de/medium/760 | Name: MARINE THERMOCOCCUS MEDIUM (DSMZ Medium 760) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water |
| 3823 | THERMOCOCCUS CHITINOPHAGUS MEDIUM (DSMZ Medium 766) | yes | https://mediadive.dsmz.de/medium/766 | Name: THERMOCOCCUS CHITINOPHAGUS MEDIUM (DSMZ Medium 766) Composition: NaCl 11.3829 g/l MgCl2 x 6 H2O 5.1604 g/l Na2SO4 1.9012 g/l CaCl2 0.5335 g/l KH2PO4 0.5 g/l Na2S x 9 H2O 0.5 g/l (NH4)2SO4 0.5 g/l KCl 0.32204 g/l HCl 0.296 g/l NaHCO3 0.09312 g/l Chitin 0.0666668 g/l KBr 0.04656 g/l MgSO4 x 7 H2O 0.045 g/l Nitrilotriacetic acid 0.0225 g/l H3BO3 0.01261 g/l SrCl2 0.01164 g/l MnSO4 x H2O 0.0075 g/l CoSO4 x 7 H2O 0.0027 g/l ZnSO4 x 7 H2O 0.0027 g/l FeSO4 x 7 H2O 0.0015 g/l CaCl2 x 2 H2O 0.0015 g/l NaF 0.001455 g/l Resazurin 0.001 g/l NiCl2 x 6 H2O 0.00045 g/l (NH4)2Ni(SO4)2 0.0003 g/l AlK(SO4)2 x 12 H2O 0.0003 g/l Na2MoO4 x 2 H2O 0.00015 g/l Na2SeO4 0.00015 g/l CuSO4 x 5 H2O 0.00015 g/l Na2WO4 x 2 H2O 6e-06 g/l Na2SeO3 x 5 H2O 4.5e-06 g/l Distilled water |
culture temp
- @ref: 3823
- growth: positive
- type: growth
- temperature: 85
- range: hyperthermophilic
Isolation, sampling and environmental information
isolation
- @ref: 3823
- sample type: deep-sea hydrothermal vent
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Hydrothermal vent |
| #Environmental | #Aquatic | #Marine |
| #Condition | #Thermophilic (>45°C) |
Safety information
risk assessment
- @ref: 3823
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | Thermococcus chitonophagus gene for 16S rRNA, partial sequence | AB033626 | 788 | ena | 54262 |
| 20218 | Thermococcus chitonophagus strain DSM 10152 16S-23S ribosomal RNA intergenic spacer region, complete sequence | AY099211 | 189 | ena | 54262 |
| 20218 | T.chitonophagus 16S rRNA gene | X99570 | 1427 | ena | 54262 |
| 3823 | Thermococcus chitonophagus strain DSM 10152 16S ribosomal RNA gene, partial sequence | AY099175 | 1369 | ena | 54262 |
Genome sequences
- @ref: 66792
- description: Pyrococcus chitonophagus DSM 10152
- accession: 2711768646
- assembly level: complete
- database: img
- NCBI tax ID: 2260
External links
@ref: 3823
culture collection no.: DSM 10152
straininfo link
- @ref: 85874
- straininfo: 48762
literature
- topic: Phylogeny
- Pubmed-ID: 27016195
- title: Analysis of the complete genome sequence of the archaeon Pyrococcus chitonophagus DSM 10152 (formerly Thermococcus chitonophagus).
- authors: Papadimitriou K, Baharidis PK, Georgoulis A, Engel M, Louka M, Karamolegkou G, Tsoka A, Blom J, Pot B, Malecki P, Rypniewski W, Huber H, Schloter M, Vorgias C
- journal: Extremophiles
- DOI: 10.1007/s00792-016-0826-x
- year: 2016
- mesh: Chitin/genetics/metabolism, *Genome, Archaeal, Phylogeny, Pyrococcus/classification/*genetics, Thermococcus/classification/*genetics
- topic2: Genetics
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 3823 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 10152) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-10152 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 85874 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID48762.1 | StrainInfo: A central database for resolving microbial strain identifiers |