Strain identifier
BacDive ID: 16861
Type strain: 
Species: Thermococcus sp.
Strain Designation: BK17S-3-a9, P6
Strain history: <- M. Thomm, Univ. Kiel, Germany; P6 (Aphrodite sulfophila) <- H. Arab and M. Thomm {1997}
NCBI tax ID(s): 35749 (species)
General
@ref: 4689
BacDive-ID: 16861
DSM-Number: 12593
keywords: genome sequence, Archaea, anaerobe, hyperthermophilic
description: Thermococcus sp. BK17S-3-a9 is an anaerobe, hyperthermophilic archaeon that was isolated from hydrothermal site off Palaeochori Bay.
NCBI tax id
- NCBI tax id: 35749
- Matching level: species
strain history
- @ref: 4689
- history: <- M. Thomm, Univ. Kiel, Germany; P6 (Aphrodite sulfophila) <- H. Arab and M. Thomm {1997}
doi: 10.13145/bacdive16861.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/archaea
- keyword: phylum/methanobacteriota
- domain: Archaea
- phylum: Methanobacteriota
- class: Thermococci
- order: Thermococcales
- family: Thermococcaceae
- genus: Thermococcus
- species: Thermococcus sp.
- full scientific name: Thermococcus Zillig 1983
@ref: 4689
domain: Archaea
phylum: Euryarchaeota
class: Thermococci
order: Thermococcales
family: Thermococcaceae
genus: Thermococcus
species: Thermococcus sp.
full scientific name: Thermococcus sp.
strain designation: BK17S-3-a9, P6
type strain: no
Culture and growth conditions
culture medium
- @ref: 4689
- name: MARINE THERMOCOCCUS MEDIUM (DSMZ Medium 760)
- growth: yes
- link: https://mediadive.dsmz.de/medium/760
- composition: Name: MARINE THERMOCOCCUS MEDIUM (DSMZ Medium 760) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
culture temp
- @ref: 4689
- growth: positive
- type: growth
- temperature: 85
- range: hyperthermophilic
Physiology and metabolism
oxygen tolerance
- @ref: 4689
- oxygen tolerance: anaerobe
Isolation, sampling and environmental information
isolation
- @ref: 4689
- sample type: hydrothermal site off Palaeochori Bay
- geographic location: Aegean Sea, Milos
- country: Greece
- origin.country: GRC
- continent: Europe
isolation source categories
| Cat1 | Cat2 |
|---|---|
| #Environmental | #Aquatic |
| #Condition | #Thermophilic (>45°C) |
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Thermococcus sp. P6 | GCA_002214525 | complete | ncbi | 122420 |
| 66792 | Thermococcus sp. P6 | 2758568029 | complete | img | 122420 |
GC content
- @ref: 4689
- GC-content: 56.0
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| flagellated | no | 96.237 | no |
| gram-positive | no | 95.249 | no |
| anaerobic | yes | 98.769 | yes |
| aerobic | no | 97.328 | yes |
| halophile | no | 70.148 | no |
| spore-forming | no | 97.522 | no |
| glucose-util | yes | 84.429 | no |
| thermophile | yes | 100 | no |
| motile | no | 83.067 | no |
| glucose-ferment | yes | 50.695 | no |
External links
@ref: 4689
culture collection no.: DSM 12593
straininfo link
- @ref: 85869
- straininfo: 407140
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 4689 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 12593) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-12593 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 85869 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID407140.1 | StrainInfo: A central database for resolving microbial strain identifiers |