Strain identifier
BacDive ID: 16858
Type strain:
Species: Pyrococcus horikoshii
Strain Designation: JA-1
Strain history: C. Kato <-- F. Robb JA-1.
NCBI tax ID(s): 53953 (species)
General
@ref: 5009
BacDive-ID: 16858
DSM-Number: 13347
keywords: 16S sequence, Archaea, anaerobe, hyperthermophilic
description: Pyrococcus horikoshii JA-1 is an anaerobe, hyperthermophilic archaeon that was isolated from marine hydrothermal vent at 1395 m depth.
NCBI tax id
- NCBI tax id: 53953
- Matching level: species
strain history
@ref | history |
---|---|
5009 | <- JCM <- C. Kato <- F. T. Robb; JA-1 |
67770 | C. Kato <-- F. Robb JA-1. |
doi: 10.13145/bacdive16858.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/archaea
- keyword: phylum/methanobacteriota
- domain: Archaea
- phylum: Methanobacteriota
- class: Thermococci
- order: Thermococcales
- family: Thermococcaceae
- genus: Pyrococcus
- species: Pyrococcus horikoshii
- full scientific name: Pyrococcus horikoshii González et al. 1999
@ref: 5009
domain: Archaea
phylum: Euryarchaeota
class: Thermococci
order: Thermococcales
family: Thermococcaceae
genus: Pyrococcus
species: Pyrococcus horikoshii
full scientific name: Pyrococcus horikoshii González et al. 1999
strain designation: JA-1
type strain: no
Culture and growth conditions
culture medium
- @ref: 5009
- name: PYROCOCCUS MEDIUM (DSMZ Medium 377)
- growth: yes
- link: https://mediadive.dsmz.de/medium/377
- composition: Name: PYROCOCCUS MEDIUM (DSMZ Medium 377) Composition: Sulfur 30.0 g/l Peptone 5.0 g/l MgCl2 x 6 H2O 2.75 g/l Yeast extract 1.0 g/l KH2PO4 0.5 g/l Na2S x 9 H2O 0.5 g/l KCl 0.33 g/l NaBr 0.05 g/l MgSO4 x 7 H2O 0.03 g/l Nitrilotriacetic acid 0.015 g/l NaCl 0.01 g/l (NH4)2SO4 0.01 g/l SrCl2 x 6 H2O 0.007 g/l Citric acid 0.005 g/l MnSO4 x H2O 0.005 g/l CoSO4 x 7 H2O 0.0018 g/l ZnSO4 x 7 H2O 0.0018 g/l CaCl2 x 2 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l Sodium resazurin 0.0005 g/l NiCl2 x 6 H2O 0.0003 g/l AlK(SO4)2 x 12 H2O 0.0002 g/l CuSO4 x 5 H2O 0.0001 g/l Na2MoO4 x 2 H2O 0.0001 g/l H3BO3 0.0001 g/l KI 5e-05 g/l Na2WO4 x 2 H2O 4e-06 g/l Na2SeO3 x 5 H2O 3e-06 g/l Distilled water
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
5009 | positive | growth | 95 | hyperthermophilic |
67770 | positive | growth | 95 | hyperthermophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 5009
- oxygen tolerance: anaerobe
Isolation, sampling and environmental information
isolation
@ref | sample type | geographic location | country | origin.country | continent | latitude | longitude |
---|---|---|---|---|---|---|---|
5009 | marine hydrothermal vent at 1395 m depth | Pacific Ocean, Okinawa Trough | Japan | JPN | Asia | 27.55 | 126.933 |
67770 | Hydrothermal vent at the Okinawa Trough |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Environmental | #Aquatic | #Hydrothermal vent |
#Environmental | #Aquatic | #Marine |
#Condition | #Thermophilic (>45°C) |
Safety information
risk assessment
- @ref: 5009
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 67770
- description: Pyrococcus horikoshii gene for 16S ribosomal RNA, partial sequence
- accession: D87344
- length: 1463
- database: ena
- NCBI tax ID: 53953
External links
@ref: 5009
culture collection no.: DSM 13347, JCM 9975
straininfo link
- @ref: 85867
- straininfo: 49458
Reference
@id | authors | catalogue | doi/url | title |
---|---|---|---|---|
5009 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 13347) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-13347 | |
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
85867 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID49458.1 | StrainInfo: A central database for resolving microbial strain identifiers |