Strain identifier
BacDive ID: 1685
Type strain:
Species: Bifidobacterium angulatum
Strain Designation: B677
Strain history: T. Mitsuoka IV-96 <-- V. Scardovi B677.
NCBI tax ID(s): 518635 (strain), 1683 (species)
General
@ref: 8524
BacDive-ID: 1685
DSM-Number: 20098
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic
description: Bifidobacterium angulatum B677 is an anaerobe, mesophilic bacterium that was isolated from human faeces.
NCBI tax id
NCBI tax id | Matching level |
---|---|
518635 | strain |
1683 | species |
strain history
@ref | history |
---|---|
8524 | <- V. Scardovi, B677 |
67770 | T. Mitsuoka IV-96 <-- V. Scardovi B677. |
doi: 10.13145/bacdive1685.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Bifidobacteriales
- family: Bifidobacteriaceae
- genus: Bifidobacterium
- species: Bifidobacterium angulatum
- full scientific name: Bifidobacterium angulatum Scardovi and Crociani 1974 (Approved Lists 1980)
@ref: 8524
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Bifidobacteriales
family: Bifidobacteriaceae
genus: Bifidobacterium
species: Bifidobacterium angulatum
full scientific name: Bifidobacterium angulatum Scardovi and Crociani 1974
strain designation: B677
type strain: yes
Morphology
cell morphology
@ref | motility | confidence | gram stain |
---|---|---|---|
69480 | no | 94.056 | |
69480 | 100 | positive |
Culture and growth conditions
culture medium
- @ref: 8524
- name: BIFIDOBACTERIUM MEDIUM (DSMZ Medium 58)
- growth: yes
- link: https://mediadive.dsmz.de/medium/58
- composition: Name: BIFIDOBACTERIUM MEDIUM (DSMZ Medium 58) Composition: Glucose 10.0 g/l Casein peptone 10.0 g/l Bacto Soytone 5.0 g/l Meat extract 5.0 g/l Yeast extract 5.0 g/l L-Cysteine HCl x H2O 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l MnSO4 x H2O 0.05 g/l KH2PO4 0.04 g/l K2HPO4 0.04 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l Tween 80 Resazurin Distilled water
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
8524 | positive | growth | 37 | mesophilic |
67770 | positive | growth | 37 | mesophilic |
Physiology and metabolism
oxygen tolerance
@ref | oxygen tolerance | confidence |
---|---|---|
8524 | anaerobe | |
69480 | anaerobe | 99.999 |
spore formation
@ref | spore formation | confidence |
---|---|---|
69481 | no | 100 |
69480 | no | 99.999 |
murein
- @ref: 8524
- murein short key: A11.31
- type: A4alpha L-Lys-D-Asp
metabolite utilization
@ref | metabolite | utilization activity | kind of utilization tested | Chebi-ID |
---|---|---|---|---|
68371 | Potassium 5-ketogluconate | - | builds acid from | |
68371 | Potassium 2-ketogluconate | - | builds acid from | |
68371 | gluconate | - | builds acid from | 24265 |
68371 | L-arabitol | - | builds acid from | 18403 |
68371 | D-arabitol | - | builds acid from | 18333 |
68371 | L-fucose | - | builds acid from | 18287 |
68371 | D-fucose | - | builds acid from | 28847 |
68371 | D-tagatose | - | builds acid from | 16443 |
68371 | D-lyxose | - | builds acid from | 62318 |
68371 | turanose | + | builds acid from | 32528 |
68371 | gentiobiose | + | builds acid from | 28066 |
68371 | xylitol | - | builds acid from | 17151 |
68371 | glycogen | - | builds acid from | 28087 |
68371 | starch | - | builds acid from | 28017 |
68371 | raffinose | + | builds acid from | 16634 |
68371 | melezitose | - | builds acid from | 6731 |
68371 | trehalose | - | builds acid from | 27082 |
68371 | melibiose | + | builds acid from | 28053 |
68371 | lactose | + | builds acid from | 17716 |
68371 | cellobiose | - | builds acid from | 17057 |
68371 | esculin | + | builds acid from | 4853 |
68371 | N-acetylglucosamine | - | builds acid from | 59640 |
68371 | methyl alpha-D-mannoside | - | builds acid from | 43943 |
68371 | D-sorbitol | - | builds acid from | 17924 |
68371 | D-mannitol | - | builds acid from | 16899 |
68371 | myo-inositol | - | builds acid from | 17268 |
68371 | galactitol | - | builds acid from | 16813 |
68371 | L-rhamnose | - | builds acid from | 62345 |
68371 | L-sorbose | - | builds acid from | 17266 |
68371 | D-mannose | - | builds acid from | 16024 |
68371 | D-fructose | + | builds acid from | 15824 |
68371 | D-glucose | + | builds acid from | 17634 |
68371 | D-galactose | + | builds acid from | 12936 |
68371 | methyl beta-D-xylopyranoside | - | builds acid from | 74863 |
68371 | ribitol | - | builds acid from | 15963 |
68371 | L-xylose | - | builds acid from | 65328 |
68371 | D-xylose | + | builds acid from | 65327 |
68371 | D-ribose | + | builds acid from | 16988 |
68371 | L-arabinose | + | builds acid from | 30849 |
68371 | D-arabinose | - | builds acid from | 17108 |
68371 | erythritol | - | builds acid from | 17113 |
68371 | glycerol | - | builds acid from | 17754 |
API 50CHac
@ref | Q | GLY | ERY | DARA | LARA | RIB | DXYL | LXYL | ADO | MDX | GAL | GLU | FRU | MNE | SBE | RHA | DUL | INO | MAN | SOR | MDM | MDG | NAG | AMY | ARB | ESC | SAL | CEL | MAL | LAC | MEL | SAC | TRE | INU | MLZ | RAF | AMD | GLYG | XLT | GEN | TUR | LYX | TAG | DFUC | LFUC | DARL | LARL | GNT | 2KG | 5KG |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
8524 | - | - | - | - | + | + | + | - | - | - | + | + | + | - | - | - | - | - | - | - | - | +/- | - | - | - | + | - | - | - | + | + | +/- | - | - | - | + | - | - | - | + | + | - | - | - | - | - | - | - | - | - |
8524 | - | - | - | - | + | + | + | - | - | - | + | + | + | - | - | - | - | - | - | - | - | + | - | +/- | +/- | + | + | - | + | + | + | + | - | + | - | + | - | - | - | + | + | - | - | - | - | - | - | - | - | - |
Isolation, sampling and environmental information
isolation
@ref | sample type |
---|---|
8524 | human faeces |
67770 | Human feces |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Host | #Human | |
#Host Body Product | #Gastrointestinal tract | #Feces (Stool) |
Safety information
risk assessment
- @ref: 8524
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
@ref | description | accession | length | database | NCBI tax ID |
---|---|---|---|---|---|
20218 | Bifidobacterium angulatum gene for 16S rRNA, partial sequence, strain: ATCC 27535 | D86182 | 1520 | ena | 518635 |
20218 | Bifidobacterium angulatum (ATCC 27535) 16S ribosomal RNA gene, partial | M84775 | 643 | ena | 1683 |
20218 | Bifidobacterium angulatum ATCC27535 16S-23S intergenic spacer | U09515 | 472 | ena | 518635 |
20218 | Bifidobacterium angulatum DSM 20098 strain JCM 7096 16S ribosomal RNA gene, partial sequence | GQ227714 | 351 | ena | 518635 |
20218 | Bifidobacterium angulatum gene for 16S rRNA, partial sequence, strain: JCM 7096 | AB116276 | 438 | ena | 518635 |
20218 | Bifidobacterium angulatum gene for 16S rRNA, partial sequence, strain: JCM 7096 | AB507069 | 664 | ena | 518635 |
67770 | Bifidobacterium angulatum gene for 16S ribosomal RNA, partial sequence, strain: JCM 7096 | LC071846 | 1464 | ena | 518635 |
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Bifidobacterium angulatum DSM 20098 = JCM 7096 | GCA_001025155 | complete | ncbi | 518635 |
66792 | Bifidobacterium angulatum DSM 20098 = JCM 7096 | 518635.7 | wgs | patric | 518635 |
66792 | Bifidobacterium angulatum DSM 20098 = JCM 7096 | 518635.17 | complete | patric | 518635 |
66792 | Bifidobacterium angulatum DSM 20098 = JCM 7096 | 518635.16 | wgs | patric | 518635 |
66792 | Bifidobacterium angulatum strain LMG 11039 | 1683.3 | wgs | patric | 1683 |
66792 | Bifidobacterium angulatum DSM 20098 | 2562617143 | draft | img | 518635 |
66792 | Bifidobacterium angulatum LMG 11039 | 2600254972 | draft | img | 1683 |
66792 | Bifidobacterium angulatum DSM 20098 | 2700989373 | draft | img | 518635 |
67770 | Bifidobacterium angulatum DSM 20098 = JCM 7096 | GCA_000156635 | scaffold | ncbi | 518635 |
67770 | Bifidobacterium angulatum DSM 20098 = JCM 7096 | GCA_000771205 | contig | ncbi | 518635 |
67770 | Bifidobacterium angulatum LMG 11039 | GCA_000741065 | contig | ncbi | 1683 |
GC content
@ref | GC-content | method |
---|---|---|
8524 | 59.0 | |
67770 | 59 | thermal denaturation, midpoint method (Tm) |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | no | 100 | no |
motile | no | 91.794 | no |
flagellated | no | 95.535 | no |
gram-positive | yes | 90.563 | no |
anaerobic | yes | 98.907 | yes |
aerobic | no | 97.763 | yes |
halophile | no | 58.666 | no |
spore-forming | no | 96.747 | no |
thermophile | no | 95.132 | yes |
glucose-util | yes | 85.087 | no |
glucose-ferment | yes | 85.224 | no |
External links
@ref: 8524
culture collection no.: DSM 20098, ATCC 27535, JCM 7096, BCRC 14665, CCUG 24039, CGMCC 1.2265, CIP 104167, JCM 1221, KCTC 3236, LMG 11039, NCFB 2236
straininfo link
- @ref: 71332
- straininfo: 9627
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Enzymology | 7745146 | Viability and enzymatic activity of bifidobacteria in milk. | Hughes DB, Hoover DG | J Dairy Sci | 10.3168/jds.S0022-0302(95)76634-6 | 1995 | Animals, Bifidobacterium/*enzymology/*growth & development, Cold Temperature, Freezing, Milk/*microbiology, alpha-Galactosidase/*metabolism | Metabolism |
Metabolism | 19251883 | Coculture fermentations of Bifidobacterium species and Bacteroides thetaiotaomicron reveal a mechanistic insight into the prebiotic effect of inulin-type fructans. | Falony G, Calmeyn T, Leroy F, De Vuyst L | Appl Environ Microbiol | 10.1128/AEM.02649-08 | 2009 | Bacteroides/*growth & development/*metabolism, Bifidobacterium/*growth & development/*metabolism, Coculture Techniques, Fermentation, Fructans/*metabolism, Inulin/metabolism, Oligosaccharides/metabolism | |
Phylogeny | 21148680 | Bifidobacterium kashiwanohense sp. nov., isolated from healthy infant faeces. | Morita H, Nakano A, Onoda H, Toh H, Oshima K, Takami H, Murakami M, Fukuda S, Takizawa T, Kuwahara T, Ohno H, Tanabe S, Hattori M | Int J Syst Evol Microbiol | 10.1099/ijs.0.024521-0 | 2010 | Bacterial Proteins/genetics/metabolism, Base Composition, Bifidobacterium/*classification/genetics/*isolation & purification, Cellulases/genetics/metabolism, DNA, Bacterial/genetics, Fatty Acids/metabolism, Feces/*microbiology, Humans, Infant, Male, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, beta-Galactosidase/genetics/metabolism | Metabolism |
Genetics | 26142062 | Complete genome sequence of Bifidobacterium angulatum JCM 7096(T) isolated from human feces. | Morita H, Toh H, Oshima K, Nakano A, Kiuchi M, Kuroyanagi H, Arakawa K, Suda W, Honda K, Hattori M | J Biotechnol | 10.1016/j.jbiotec.2015.06.412 | 2015 | Base Sequence, Bifidobacterium/*genetics/*isolation & purification, Feces/*microbiology, *Genome, Bacterial, Humans, Sequence Analysis, DNA | Pathogenicity |
Metabolism | 27233082 | Bifidobacterial inulin-type fructan degradation capacity determines cross-feeding interactions between bifidobacteria and Faecalibacterium prausnitzii. | Moens F, Weckx S, De Vuyst L | Int J Food Microbiol | 10.1016/j.ijfoodmicro.2016.05.015 | 2016 | Bifidobacterium/*metabolism, Coculture Techniques, Faecalibacterium prausnitzii/*metabolism, Fermentation, *Food Microbiology, Fructans/*metabolism, Humans, Inulin/metabolism | Biotechnology |
Phylogeny | 33226935 | Five novel bifidobacterial species isolated from faeces of primates in two Czech zoos: Bifidobacterium erythrocebi sp. nov., Bifidobacterium moraviense sp. nov., Bifidobacterium oedipodis sp. nov., Bifidobacterium olomucense sp. nov. and Bifidobacterium panos sp. nov. | Neuzil-Bunesova V, Lugli GA, Modrackova N, Vlkova E, Bolechova P, Burtscher J, Longhi G, Mancabelli L, Killer J, Domig K, Ventura M | Int J Syst Evol Microbiol | 10.1099/ijsem.0.004573 | 2020 | Animals, Animals, Zoo/microbiology, Bacterial Typing Techniques, Base Composition, Bifidobacterium/*classification/isolation & purification, Czech Republic, DNA, Bacterial/genetics, Fatty Acids/chemistry, Feces/*microbiology, Nucleic Acid Hybridization, *Phylogeny, Primates/*microbiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA | Transcriptome |
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
8524 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 20098) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-20098 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
68371 | Automatically annotated from API 50CH acid | |||||
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
71332 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID9627.1 | StrainInfo: A central database for resolving microbial strain identifiers |