Strain identifier
BacDive ID: 16842
Type strain: 
Species: Thermoanaerobacter mathranii
Strain Designation: A3
Strain history: <- B. K. Ahring, Technical University of Denmark, Department of Environmental Science and Engineering, Lyngby, Denmark; A3 <- J. Sonne-Hansen {1991}
NCBI tax ID(s): 583358 (strain), 583357 (species)
version 8.1 (current version)
General
@ref: 4359
BacDive-ID: 16842
DSM-Number: 11426
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, thermophilic
description: Thermoanaerobacter mathranii A3 is an anaerobe, thermophilic bacterium that was isolated from sediment of hot spring.
NCBI tax id
| NCBI tax id | Matching level |
|---|---|
| 583357 | species |
| 583358 | strain |
strain history
- @ref: 4359
- history: <- B. K. Ahring, Technical University of Denmark, Department of Environmental Science and Engineering, Lyngby, Denmark; A3 <- J. Sonne-Hansen {1991}
doi: 10.13145/bacdive16842.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Clostridia
- order: Thermoanaerobacterales
- family: Thermoanaerobacteraceae
- genus: Thermoanaerobacter
- species: Thermoanaerobacter mathranii
- full scientific name: Thermoanaerobacter mathranii Larsen et al. 1998
@ref: 4359
domain: Bacteria
phylum: Firmicutes
class: Clostridia
order: Thermoanaerobacterales
family: Thermoanaerobacteraceae
genus: Thermoanaerobacter
species: Thermoanaerobacter mathranii subsp. mathranii
full scientific name: Thermoanaerobacter mathranii subsp. mathranii (Larsen et al. 1998) Carlier et al. 2007
strain designation: A3
type strain: yes
Culture and growth conditions
culture medium
- @ref: 4359
- name: CALDICELLULOSIRUPTOR MEDIUM (DSMZ Medium 640)
- growth: yes
- link: https://mediadive.dsmz.de/medium/640
- composition: Name: CALDICELLULOSIRUPTOR MEDIUM (DSMZ Medium 640; with strain-specific modifications) Composition: D-Glucose 5.0 g/l Trypticase peptone 2.0 g/l K2HPO4 1.5 g/l Yeast extract 1.0 g/l NH4Cl 0.9 g/l NaCl 0.9 g/l KH2PO4 0.75 g/l L-Cysteine HCl x H2O 0.75 g/l MgCl2 x 6 H2O 0.4 g/l HCl 0.0025 g/l FeCl3 x 6 H2O 0.0025 g/l FeCl2 x 4 H2O 0.0015 g/l Sodium resazurin 0.0005 g/l CoCl2 x 6 H2O 0.00019 g/l MnCl2 x 4 H2O 0.0001 g/l ZnCl2 7e-05 g/l Na2MoO4 x 2 H2O 3.6e-05 g/l NiCl2 x 6 H2O 2.4e-05 g/l H3BO3 6e-06 g/l CuCl2 x 2 H2O 2e-06 g/l Distilled water
culture temp
- @ref: 4359
- growth: positive
- type: growth
- temperature: 70
- range: thermophilic
Physiology and metabolism
oxygen tolerance
- @ref: 4359
- oxygen tolerance: anaerobe
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 4359 | sediment of hot spring | Hverdagerdi-Hengil area | Iceland | ISL | Europe |
| 59960 | Hot spring | Hverdagerdi-Hengil area | Iceland | ISL | Europe |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Thermal spring |
| #Condition | #Thermophilic (>45°C) | |
| #Environmental | #Aquatic | #Sediment |
Safety information
risk assessment
- @ref: 4359
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 4359
- description: T.mathranii 16S rRNA gene
- accession: Y11279
- length: 1507
- database: ena
- NCBI tax ID: 583358
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Thermoanaerobacter mathranii subsp. mathranii str. A3 | GCA_000092965 | complete | ncbi | 583358 |
| 66792 | Thermoanaerobacter mathranii subsp. mathranii str. A3 | 583358.4 | complete | patric | 583358 |
| 66792 | Thermoanaerobacter mathranii mathranii A3, DSM 11426 | 646564580 | complete | img | 583358 |
GC content
- @ref: 4359
- GC-content: 37
- method: high performance liquid chromatography (HPLC)
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | yes | 86.004 | no |
| flagellated | no | 85.833 | no |
| gram-positive | no | 68.932 | no |
| anaerobic | yes | 99.546 | yes |
| aerobic | no | 98.954 | no |
| halophile | no | 96.045 | no |
| spore-forming | yes | 91.365 | no |
| thermophile | yes | 100 | yes |
| glucose-util | yes | 90.145 | no |
| glucose-ferment | yes | 57.607 | no |
External links
@ref: 4359
culture collection no.: DSM 11426, CIP 108742, CCUG 53645, AIP 130.05
straininfo link
- @ref: 85852
- straininfo: 49109
literature
- topic: Biotechnology
- Pubmed-ID: 23448304
- title: Single-step ethanol production from lignocellulose using novel extremely thermophilic bacteria.
- authors: Svetlitchnyi VA, Kensch O, Falkenhan DA, Korseska SG, Lippert N, Prinz M, Sassi J, Schickor A, Curvers S
- journal: Biotechnol Biofuels
- DOI: 10.1186/1754-6834-6-31
- year: 2013
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 4359 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 11426) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-11426 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 59960 | Curators of the CCUG | Culture Collection University of Gothenburg (CCUG) (CCUG 53645) | https://www.ccug.se/strain?id=53645 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 85852 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID49109.1 | StrainInfo: A central database for resolving microbial strain identifiers |