Strain identifier

BacDive ID: 168333

Type strain: Yes

Species: Nioella nitratireducens

Strain Designation: SSW136

NCBI tax ID(s): 1287720 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 20215

BacDive-ID: 168333

keywords: genome sequence, 16S sequence, Bacteria

description: Nioella nitratireducens SSW136 is a bacterium of the family Roseobacteraceae.

NCBI tax id

  • NCBI tax id: 1287720
  • Matching level: species

doi: 10.13145/bacdive168333.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Rhodobacterales
  • family: Roseobacteraceae
  • genus: Nioella
  • species: Nioella nitratireducens
  • full scientific name: Nioella nitratireducens Rajasabapathy et al. 2015

@ref: 20215

domain: Bacteria

phylum: Pseudomonadota

class: Alphaproteobacteria

order: Rhodobacterales

family: Rhodobacteraceae

genus: Nioella

species: Nioella nitratireducens

full scientific name: Nioella nitratireducens Rajasabapathy et al. 2015

strain designation: SSW136

type strain: yes

Isolation, sampling and environmental information

taxonmaps

  • @ref: 69479
  • File name: preview.99_6050.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_19;96_2886;97_3545;98_4488;99_6050&stattab=map
  • Last taxonomy: Nioella nitratireducens subclade
  • 16S sequence: KC534331
  • Sequence Identity:
  • Total samples: 121
  • soil counts: 1
  • aquatic counts: 116
  • animal counts: 4

Safety information

risk assessment

  • @ref: 20215
  • biosafety level: 1
  • biosafety level comment: Risk group

Sequence information

16S sequences

  • @ref: 20215
  • description: Nioella nitratireducens strain SSW136 16S ribosomal RNA gene, partial sequence
  • accession: KC534331
  • length: 1411
  • database: ena
  • NCBI tax ID: 1287720

Genome sequences

  • @ref: 66792
  • description: Nioella nitratireducens SSW136
  • accession: GCA_001879715
  • assembly level: contig
  • database: ncbi
  • NCBI tax ID: 1287720

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
flagellatedno95.689no
gram-positiveno98.378no
anaerobicno96.252no
aerobicyes78.116no
halophileyes60.464no
spore-formingno96.159no
thermophileno95.231no
glucose-utilyes71.732no
motileno90.842no
glucose-fermentno92.429no

External links

@ref: 20215

culture collection no.: KCTC 32417, NCIM 5499

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny25500750Nioella nitratireducens gen. nov., sp. nov., a novel member of the family Rhodobacteraceae isolated from Azorean Island.Rajasabapathy R, Mohandass C, Yoon JH, Dastager SG, Liu Q, Khieu TN, Son CK, Li WJ, Colaco AAntonie Van Leeuwenhoek10.1007/s10482-014-0355-52014Aerobiosis, Azores, Base Composition, Cluster Analysis, Cytosol/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Hydrogen-Ion Concentration, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/analysis, Phylogeny, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Rhodobacteraceae/*classification/genetics/*isolation & purification/physiology, Seawater/*microbiology, Sequence Analysis, DNA, Sodium Chloride/metabolism, TemperatureGenetics
Phylogeny28100309Nioella sediminis sp. nov., isolated from surface sediment and emended description of the genus Nioella.Liu Y, Du J, Lai Q, Dong C, Shao ZInt J Syst Evol Microbiol10.1099/ijsem.0.0017982017Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Geologic Sediments/*microbiology, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Rhodobacteraceae/*classification/genetics/isolation & purification, Rivers/*microbiology, Sequence Analysis, DNA, Ubiquinone/chemistryTranscriptome
Phylogeny29056115Nioella aestuarii sp. nov., of the family Rhodobacteraceae, isolated from tidal flat.Cha IT, Cho ES, Park JM, Yeh JY, Seo MJInt J Syst Evol Microbiol10.1099/ijsem.0.0024422017Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Geologic Sediments/*microbiology, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Rhodobacteraceae/*classification/genetics/isolation & purification, Seawater/*microbiology, Sequence Analysis, DNA, Ubiquinone/analogs & derivatives/chemistryTranscriptome
Phylogeny30932806Rhodophyticola porphyridii gen. nov., sp. nov., isolated from a red alga, Porphyridium marinum.Jung HS, Jeong SE, Chun BH, Quan ZX, Jeon COInt J Syst Evol Microbiol10.1099/ijsem.0.0033712019Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Phospholipids/chemistry, *Phylogeny, Porphyridium/*microbiology, RNA, Ribosomal, 16S/genetics, Republic of Korea, Rhodobacteraceae/*classification, Sequence Analysis, DNA, Ubiquinone/chemistryTranscriptome
Phylogeny31833831Nioella ostreopsis sp. nov., isolated from toxic dinoflagellate, Ostreopsis lenticularis.Yang Q, Jiang Z, Zhou X, Zhang R, Wu Y, Lou L, Ma Z, Wang D, Ge Y, Zhang X, Yu XInt J Syst Evol Microbiol10.1099/ijsem.0.0038162020Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Dinoflagellida/*microbiology, Fatty Acids/chemistry, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Rhodobacteraceae/*classification/isolation & purification, Sequence Analysis, DNATranscriptome
Phylogeny34036410Harenicola maris gen. nov., sp. nov. isolated from the Sea of Japan shallow sediments.Romanenko LA, Kurilenko VV, Chernysheva NY, Tekutyeva LA, Velansky PV, Svetashev VI, Isaeva MPArch Microbiol10.1007/s00203-021-02360-02021*Geologic Sediments/microbiology, Oceans and Seas, Phospholipids/analysis, Phylogeny, RNA, Ribosomal, 16S/genetics, *Rhodobacteraceae/classification/genetics, Russia, Species Specificity

Reference

@idauthorstitledoi/url
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/