Strain identifier
BacDive ID: 168333
Type strain:
Species: Nioella nitratireducens
Strain Designation: SSW136
NCBI tax ID(s): 1287720 (species)
version 8.1 (current version)
General
@ref: 20215
BacDive-ID: 168333
keywords: genome sequence, 16S sequence, Bacteria
description: Nioella nitratireducens SSW136 is a bacterium of the family Roseobacteraceae.
NCBI tax id
- NCBI tax id: 1287720
- Matching level: species
doi: 10.13145/bacdive168333.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Rhodobacterales
- family: Roseobacteraceae
- genus: Nioella
- species: Nioella nitratireducens
- full scientific name: Nioella nitratireducens Rajasabapathy et al. 2015
@ref: 20215
domain: Bacteria
phylum: Pseudomonadota
class: Alphaproteobacteria
order: Rhodobacterales
family: Rhodobacteraceae
genus: Nioella
species: Nioella nitratireducens
full scientific name: Nioella nitratireducens Rajasabapathy et al. 2015
strain designation: SSW136
type strain: yes
Isolation, sampling and environmental information
taxonmaps
- @ref: 69479
- File name: preview.99_6050.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_19;96_2886;97_3545;98_4488;99_6050&stattab=map
- Last taxonomy: Nioella nitratireducens subclade
- 16S sequence: KC534331
- Sequence Identity:
- Total samples: 121
- soil counts: 1
- aquatic counts: 116
- animal counts: 4
Safety information
risk assessment
- @ref: 20215
- biosafety level: 1
- biosafety level comment: Risk group
Sequence information
16S sequences
- @ref: 20215
- description: Nioella nitratireducens strain SSW136 16S ribosomal RNA gene, partial sequence
- accession: KC534331
- length: 1411
- database: ena
- NCBI tax ID: 1287720
Genome sequences
- @ref: 66792
- description: Nioella nitratireducens SSW136
- accession: GCA_001879715
- assembly level: contig
- database: ncbi
- NCBI tax ID: 1287720
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
flagellated | no | 95.689 | no |
gram-positive | no | 98.378 | no |
anaerobic | no | 96.252 | no |
aerobic | yes | 78.116 | no |
halophile | yes | 60.464 | no |
spore-forming | no | 96.159 | no |
thermophile | no | 95.231 | no |
glucose-util | yes | 71.732 | no |
motile | no | 90.842 | no |
glucose-ferment | no | 92.429 | no |
External links
@ref: 20215
culture collection no.: KCTC 32417, NCIM 5499
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 25500750 | Nioella nitratireducens gen. nov., sp. nov., a novel member of the family Rhodobacteraceae isolated from Azorean Island. | Rajasabapathy R, Mohandass C, Yoon JH, Dastager SG, Liu Q, Khieu TN, Son CK, Li WJ, Colaco A | Antonie Van Leeuwenhoek | 10.1007/s10482-014-0355-5 | 2014 | Aerobiosis, Azores, Base Composition, Cluster Analysis, Cytosol/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Hydrogen-Ion Concentration, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/analysis, Phylogeny, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Rhodobacteraceae/*classification/genetics/*isolation & purification/physiology, Seawater/*microbiology, Sequence Analysis, DNA, Sodium Chloride/metabolism, Temperature | Genetics |
Phylogeny | 28100309 | Nioella sediminis sp. nov., isolated from surface sediment and emended description of the genus Nioella. | Liu Y, Du J, Lai Q, Dong C, Shao Z | Int J Syst Evol Microbiol | 10.1099/ijsem.0.001798 | 2017 | Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Geologic Sediments/*microbiology, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Rhodobacteraceae/*classification/genetics/isolation & purification, Rivers/*microbiology, Sequence Analysis, DNA, Ubiquinone/chemistry | Transcriptome |
Phylogeny | 29056115 | Nioella aestuarii sp. nov., of the family Rhodobacteraceae, isolated from tidal flat. | Cha IT, Cho ES, Park JM, Yeh JY, Seo MJ | Int J Syst Evol Microbiol | 10.1099/ijsem.0.002442 | 2017 | Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Geologic Sediments/*microbiology, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Rhodobacteraceae/*classification/genetics/isolation & purification, Seawater/*microbiology, Sequence Analysis, DNA, Ubiquinone/analogs & derivatives/chemistry | Transcriptome |
Phylogeny | 30932806 | Rhodophyticola porphyridii gen. nov., sp. nov., isolated from a red alga, Porphyridium marinum. | Jung HS, Jeong SE, Chun BH, Quan ZX, Jeon CO | Int J Syst Evol Microbiol | 10.1099/ijsem.0.003371 | 2019 | Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Phospholipids/chemistry, *Phylogeny, Porphyridium/*microbiology, RNA, Ribosomal, 16S/genetics, Republic of Korea, Rhodobacteraceae/*classification, Sequence Analysis, DNA, Ubiquinone/chemistry | Transcriptome |
Phylogeny | 31833831 | Nioella ostreopsis sp. nov., isolated from toxic dinoflagellate, Ostreopsis lenticularis. | Yang Q, Jiang Z, Zhou X, Zhang R, Wu Y, Lou L, Ma Z, Wang D, Ge Y, Zhang X, Yu X | Int J Syst Evol Microbiol | 10.1099/ijsem.0.003816 | 2020 | Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Dinoflagellida/*microbiology, Fatty Acids/chemistry, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Rhodobacteraceae/*classification/isolation & purification, Sequence Analysis, DNA | Transcriptome |
Phylogeny | 34036410 | Harenicola maris gen. nov., sp. nov. isolated from the Sea of Japan shallow sediments. | Romanenko LA, Kurilenko VV, Chernysheva NY, Tekutyeva LA, Velansky PV, Svetashev VI, Isaeva MP | Arch Microbiol | 10.1007/s00203-021-02360-0 | 2021 | *Geologic Sediments/microbiology, Oceans and Seas, Phospholipids/analysis, Phylogeny, RNA, Ribosomal, 16S/genetics, *Rhodobacteraceae/classification/genetics, Russia, Species Specificity |
Reference
@id | authors | title | doi/url |
---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |