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Strain identifier

BacDive ID: 168332

Type strain: Yes

Species: Halomonas radicis

Strain Designation: EAR18

NCBI tax ID(s): 2759926 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 7.1 (current version):
version 7:
version 7.1 (current version)

General

@ref: 20215

BacDive-ID: 168332

keywords: 16S sequence, Bacteria

description: Halomonas radicis EAR18 is a bacterium of the family Halomonadaceae.

NCBI tax id

  • NCBI tax id: 2759926
  • Matching level: species

doi: 10.13145/bacdive168332.20221219.7.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Oceanospirillales
  • family: Halomonadaceae
  • genus: Halomonas
  • species: Halomonas radicis
  • full scientific name: Halomonas radicis Navarro-Torre et al. 2020

@ref: 20215

domain: Bacteria

phylum: Pseudomonadota

class: Gammaproteobacteria

order: Oceanospirillales

family: Halomonadaceae

genus: Halomonas

species: Halomonas radicis

full scientific name: Halomonas radicis Navarro-Torre et al. 2020

strain designation: EAR18

type strain: yes

Isolation, sampling and environmental information

taxonmaps

  • @ref: 69479
  • File name: preview.99_82709.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_48;96_2476;97_3024;98_3792;99_82709&stattab=map
  • Last taxonomy: Halomonas radicis
  • 16S sequence: KU320882
  • Sequence Identity:
  • Total samples: 60
  • soil counts: 15
  • aquatic counts: 19
  • animal counts: 22
  • plant counts: 4

Sequence information

16S sequences

  • @ref: 20215
  • description: Halomonas radicis strain EAR18 16S ribosomal RNA gene, partial sequence
  • accession: KU320882
  • length: 1322
  • database: ena
  • NCBI tax ID: 2759926

External links

@ref: 20215

culture collection no.: CECT 9077, LMG 29859

literature

  • topic: Phylogeny
  • Pubmed-ID: 31535966
  • title: Halomonas radicis sp. nov., isolated from Arthrocnemum macrostachyum growing in the Odiel marshes(Spain) and emended descriptions of Halomonas xinjiangensis and Halomonas zincidurans.
  • authors: Navarro-Torre S, Carro L, Rodriguez-Llorente ID, Pajuelo E, Caviedes MA, Igual JM, Klenk HP, Montero-Calasanz MDC
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.003742
  • year: 2020
  • mesh: Bacterial Typing Techniques, Base Composition, Chenopodiaceae/*microbiology, DNA, Bacterial/genetics, Endophytes/classification/isolation & purification, Fatty Acids/chemistry, Halomonas/*classification/isolation & purification, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, Plant Roots/*microbiology, RNA, Ribosomal, 16S/genetics, Salt-Tolerant Plants/microbiology, Sequence Analysis, DNA, Spain, *Wetlands
  • topic2: Enzymology

Reference

@idauthorstitledoi/url
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/