Archive BacDiveID:10.13145/bacdive16809.20230509.8.1

Strain identifier

BacDive ID: 16809

Type strain:

Species: Carboxydothermus islandicus

Strain history: <- A. A. Novikov, Gubkin Russian State University of Oil and Gas; SET IS-9

NCBI tax ID(s): 661089 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.

General

@ref: 15977

BacDive-ID: 16809

DSM-Number: 21830

keywords: 16S sequence, Bacteria, anaerobe, thermophilic

description: Carboxydothermus islandicus DSM 21830 is an anaerobe, thermophilic bacterium that was isolated from hot spring.

NCBI tax id

NCBI tax id: 661089
Matching level: species

strain history

@ref: 15977
history: <- A. A. Novikov, Gubkin Russian State University of Oil and Gas; SET IS-9

doi: 10.13145/bacdive16809.20230509.8.1

Name and taxonomic classification

LPSN

@ref: 20215
description: domain/bacteria
keyword: phylum/bacillota
domain: Bacteria
phylum: Bacillota
class: Clostridia
order: Thermoanaerobacterales
family: Thermoanaerobacteraceae
genus: Carboxydothermus
species: Carboxydothermus islandicus
full scientific name: Carboxydothermus islandicus Novikov et al. 2011

@ref: 15977

domain: Bacteria

phylum: Firmicutes

class: Clostridia

order: Clostridiales

family: Thermoanaerobacteraceae

genus: Carboxydothermus

species: Carboxydothermus islandicus

full scientific name: Carboxydothermus islandicus Novikov et al. 2011

type strain: yes

Morphology

colony morphology

@ref: 15977
incubation period: 3-7 days

Culture and growth conditions

culture medium

@ref: 15977
name: CARBOXYDOTHERMUS MEDIUM (DSMZ Medium 507)
growth: yes
link: https://mediadive.dsmz.de/medium/507
composition: Name: CARBOXYDOTHERMUS MEDIUM (DSMZ Medium 507) Composition: NaHCO3 0.998004 g/l Na2S x 9 H2O 0.698603 g/l MgCl2 x 6 H2O 0.518962 g/l NH4Cl 0.329341 g/l KH2PO4 0.329341 g/l KCl 0.329341 g/l CaCl2 x 2 H2O 0.289421 g/l Yeast extract 0.0499002 g/l Na2-EDTA x 2 H2O 0.00518962 g/l FeCl2 x 4 H2O 0.00149701 g/l Sodium resazurin 0.000499002 g/l CoCl2 x 6 H2O 0.000189621 g/l Pyridoxine hydrochloride 9.98004e-05 g/l MnCl2 x 4 H2O 9.98004e-05 g/l ZnCl2 6.98603e-05 g/l Riboflavin 4.99002e-05 g/l (DL)-alpha-Lipoic acid 4.99002e-05 g/l p-Aminobenzoic acid 4.99002e-05 g/l Calcium D-(+)-pantothenate 4.99002e-05 g/l Nicotinic acid 4.99002e-05 g/l Thiamine HCl 4.99002e-05 g/l Na2MoO4 x 2 H2O 3.59281e-05 g/l NiCl2 x 6 H2O 2.39521e-05 g/l Biotin 1.99601e-05 g/l Folic acid 1.99601e-05 g/l H3BO3 5.98802e-06 g/l CuCl2 x 2 H2O 1.99601e-06 g/l Vitamin B12 9.98004e-07 g/l Distilled water

culture temp

@ref: 15977
growth: positive
type: growth
temperature: 60
range: thermophilic

Physiology and metabolism

oxygen tolerance

@ref: 15977
oxygen tolerance: anaerobe

Isolation, sampling and environmental information

isolation

@ref: 15977
sample type: hot spring
country: Iceland
origin.country: ISL
continent: Europe

isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Thermal spring
#Condition	#Thermophilic (>45°C)

taxonmaps

@ref: 69479
File name: preview.99_38219.png
url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_16249;96_2183;97_2641;98_28043;99_38219&stattab=map
Last taxonomy: Carboxydothermus islandicus subclade
16S sequence: GQ324698
Sequence Identity:
Total samples: 17
soil counts: 1
aquatic counts: 11
animal counts: 5

Safety information

risk assessment

@ref: 15977
biosafety level: 1
biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@ref: 15977
description: Carboxydothermus islandicus strain SET IS-9 16S ribosomal RNA gene, partial sequence
accession: GQ324698
length: 1447
database: ena
NCBI tax ID: 661089

GC content

@ref: 15977
GC-content: 37.7

External links

@ref: 15977

culture collection no.: DSM 21830, VKM B-2561, SET IS-9

straininfo link

@ref: 85822
straininfo: 396540

literature

topic: Phylogeny
Pubmed-ID: 21131500
title: Carboxydothermus islandicus sp. nov., a thermophilic, hydrogenogenic, carboxydotrophic bacterium isolated from a hot spring.
authors: Novikov AA, Sokolova TG, Lebedinsky AV, Kolganova TV, Bonch-Osmolovskaya EA
journal: Int J Syst Evol Microbiol
DOI: 10.1099/ijs.0.030288-0
year: 2010
mesh: Anaerobiosis, Carbon Dioxide, Carbon Monoxide/*metabolism, Chemoautotrophic Growth, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Gram-Positive Bacteria/*classification/genetics/*isolation & purification/physiology, Hot Springs/*microbiology, Hot Temperature, Hydrogen/*metabolism, Hydrogen-Ion Concentration, Iceland, Lactates/metabolism, Locomotion, Molecular Sequence Data, Phylogeny, Pyruvic Acid/metabolism, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA
topic2: Metabolism

Reference

@id	authors	catalogue	doi/url	title
15977	Curators of the DSMZ	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 21830)	https://www.dsmz.de/collection/catalogue/details/culture/DSM-21830
20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.		10.1099/ijsem.0.004332	List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.		https://microbeatlas.org/	MicrobeAtlas 1.0 beta
85822	Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.		10.60712/SI-ID396540.1	StrainInfo: A central database for resolving microbial strain identifiers