Strain identifier
BacDive ID: 16801
Type strain:
Species: Tepidanaerobacter acetatoxydans
Strain Designation: Re1
Strain history: A. Schnürer Re1.
NCBI tax ID(s): 499229 (species)
General
@ref: 15965
BacDive-ID: 16801
DSM-Number: 21804
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic
description: Tepidanaerobacter acetatoxydans Re1 is an anaerobe, mesophilic bacterium that was isolated from silage of alfalfa in a stirred laboratory reactor.
NCBI tax id
- NCBI tax id: 499229
- Matching level: species
strain history
@ref | history |
---|---|
15965 | <- A. Schnürer, Swedish Univ. Agric. Sci., Uppsala, Sweden; Re1 |
67770 | A. Schnürer Re1. |
doi: 10.13145/bacdive16801.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Clostridia
- order: Thermosediminibacterales
- family: Tepidanaerobacteraceae
- genus: Tepidanaerobacter
- species: Tepidanaerobacter acetatoxydans
- full scientific name: Tepidanaerobacter acetatoxydans Westerholm et al. 2011
@ref: 15965
domain: Bacteria
phylum: Firmicutes
class: Clostridia
order: Thermoanaerobacterales
family: Tepidanaerobacteraceae
genus: Tepidanaerobacter
species: Tepidanaerobacter acetatoxydans
full scientific name: Tepidanaerobacter acetatoxydans Westerholm et al. 2011
strain designation: Re1
type strain: yes
Culture and growth conditions
culture medium
- @ref: 15965
- name: TEPIDANAEROBACTER ACETATOXYDANS MEDIUM (DSMZ Medium 1301)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1301
- composition: Name: TEPIDANAEROBACTER ACETATOXYDANS MEDIUM (DSMZ Medium 1301) Composition: D-Glucose 1.8 g/l Na2CO3 1.5 g/l L-Cysteine HCl x H2O 0.5 g/l Na2HPO4 0.43 g/l KH2PO4 0.41 g/l Na2S x 9 H2O 0.3 g/l NH4Cl 0.3 g/l NaCl 0.3 g/l Yeast extract 0.2 g/l CaCl2 x 2 H2O 0.11 g/l MgCl2 x 6 H2O 0.1 g/l FeCl2 x 4 H2O 0.002 g/l Na2-EDTA 0.0005 g/l NaOH 0.0005 g/l Sodium resazurin 0.0005 g/l CoCl2 x 6 H2O 0.00019 g/l MnCl2 x 4 H2O 0.0001 g/l ZnCl2 7e-05 g/l Na2MoO4 x 2 H2O 3.6e-05 g/l NiCl2 x 6 H2O 2.4e-05 g/l Pyridoxine hydrochloride 2e-05 g/l (DL)-alpha-Lipoic acid 1e-05 g/l Riboflavin 1e-05 g/l p-Aminobenzoic acid 1e-05 g/l Calcium D-(+)-pantothenate 1e-05 g/l Thiamine HCl 1e-05 g/l AlCl3 1e-05 g/l Nicotinic acid 1e-05 g/l H3BO3 6e-06 g/l Folic acid 4e-06 g/l Na2WO4 x 2 H2O 4e-06 g/l Biotin 4e-06 g/l Na2SeO3 x 5 H2O 3e-06 g/l CuCl2 x 2 H2O 2e-06 g/l Vitamin B12 2e-07 g/l Distilled water
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
15965 | positive | growth | 37 | mesophilic |
67770 | positive | growth | 37 | mesophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 15965
- oxygen tolerance: anaerobe
Isolation, sampling and environmental information
isolation
@ref | sample type | geographic location | country | origin.country | continent |
---|---|---|---|---|---|
15965 | silage of alfalfa in a stirred laboratory reactor | Uppsala | Sweden | SWE | Europe |
67770 | Two ammonium-enriched mesophilic methanogenic processes |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Engineered | #Bioreactor | |
#Engineered | #Laboratory | |
#Host | #Plants | #Herbaceous plants (Grass,Crops) |
taxonmaps
- @ref: 69479
- File name: preview.99_6228.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_560;96_2965;97_3646;98_4614;99_6228&stattab=map
- Last taxonomy: Tepidanaerobacter acetatoxydans subclade
- 16S sequence: EU386163
- Sequence Identity:
- Total samples: 4897
- soil counts: 174
- aquatic counts: 806
- animal counts: 3804
- plant counts: 113
Sequence information
16S sequences
- @ref: 15965
- description: Tepidanaerobacter acetatoxydans Re1 16S ribosomal RNA gene, partial sequence
- accession: EU386163
- length: 1458
- database: ena
- NCBI tax ID: 1209989
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Tepidanaerobacter acetatoxydans Re1 | GCA_000213235 | complete | ncbi | 1209989 |
66792 | Tepidanaerobacter acetatoxydans Re1 | GCA_000328765 | complete | ncbi | 1209989 |
66792 | Tepidanaerobacter acetatoxydans Re1 | 1209989.3 | complete | patric | 1209989 |
66792 | Tepidanaerobacter acetatoxydans Re1 | 2540341113 | complete | img | 1209989 |
GC content
- @ref: 15965
- GC-content: 38.4
- method: high performance liquid chromatography (HPLC)
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
motile | yes | 77.233 | no |
flagellated | no | 86.326 | no |
gram-positive | no | 74.876 | no |
anaerobic | yes | 98.97 | no |
halophile | no | 88.778 | no |
spore-forming | yes | 56.68 | no |
thermophile | yes | 95.716 | no |
glucose-util | yes | 90.969 | no |
aerobic | no | 93.868 | yes |
glucose-ferment | yes | 66.05 | no |
External links
@ref: 15965
culture collection no.: DSM 21804, JCM 16047
literature
- topic: Phylogeny
- Pubmed-ID: 21498020
- title: Tepidanaerobacter acetatoxydans sp. nov., an anaerobic, syntrophic acetate-oxidizing bacterium isolated from two ammonium-enriched mesophilic methanogenic processes.
- authors: Westerholm M, Roos S, Schnurer A
- journal: Syst Appl Microbiol
- DOI: 10.1016/j.syapm.2010.11.018
- year: 2011
- mesh: Acetates/metabolism, Anaerobiosis, Base Composition, Carbon/metabolism, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Formate-Tetrahydrofolate Ligase/genetics, Gram-Positive Bacteria/*classification/genetics/*isolation & purification/physiology, Hot Temperature, Locomotion, Molecular Sequence Data, Nucleic Acid Hybridization, Oxidation-Reduction, Phylogeny, Quaternary Ammonium Compounds/metabolism, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sewage/*microbiology
- topic2: Metabolism
Reference
@id | authors | catalogue | doi/url | title |
---|---|---|---|---|
15965 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 21804) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-21804 | |
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta |