Strain identifier

BacDive ID: 16797

Type strain: Yes

Species: Caldanaerobacter uzonensis

Strain Designation: K67

Culture col. no.: DSM 18923, VKM B-2408

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 7777

BacDive-ID: 16797

DSM-Number: 18923

keywords: spore-forming, anaerobe, Bacteria, 16S sequence, thermophilic, rod-shaped

description: Caldanaerobacter uzonensis K67 is an anaerobe, spore-forming, thermophilic bacterium that was isolated from terrestrial hot spring.

strain history: <- I. V. Kozina, Winogradsky Inst. Microbiol., RAS, Moscow, Russia; K67 <- E. A. Bonch-Osmolovskaya {1998}

doi: 10.13145/bacdive16797.20201210.5

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/firmicutes
  • domain: Bacteria
  • phylum: Firmicutes
  • class: Clostridia
  • order: Thermoanaerobacterales
  • family: Thermoanaerobacteraceae
  • genus: Caldanaerobacter
  • species: Caldanaerobacter uzonensis
  • full scientific name: Caldanaerobacter uzonensis Kozina et al. 2010

@ref: 7777

domain: Bacteria

phylum: Firmicutes

class: Clostridia

order: Thermoanaerobacterales

family: Thermoanaerobacteraceae

genus: Caldanaerobacter

species: Caldanaerobacter uzonensis

full scientific name: Caldanaerobacter uzonensis Kozina et al. 2010

strain designation: K67

type strain: yes

Morphology

cell morphology

  • @ref: 29399
  • cell length: 2.5 µm
  • cell width: 0.4 µm
  • cell shape: rod-shaped

Culture and growth conditions

culture medium

  • @ref: 7777
  • name: CARBOXYDOTHERMUS MEDIUM (HETEROTROPH) (DSMZ Medium 508), with strain-specific modifications, anaerobic
  • growth: yes
  • link: https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium508.pdf

culture temp

@refgrowthtypetemperaturerange
7777positivegrowth70thermophilic
29399positivegrowth50-75thermophilic
29399positiveoptimum69thermophilic

culture pH

@refabilitytypepH
29399positivegrowth4.8-8
29399positiveoptimum6.8

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
7777anaerobe
29399anaerobe

spore formation

  • @ref: 29399
  • spore formation: yes

halophily

@refsaltgrowthtested relationconcentration
29399NaClpositivegrowth0-2 %
29399NaClpositiveoptimum0.5 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2939922599arabinose+carbon source
2939937684mannose+carbon source
2939917992sucrose+carbon source
2939918222xylose+carbon source

metabolite production

  • @ref: 29399
  • Chebi-ID: 16136
  • metabolite: hydrogen sulfide
  • production: yes

Isolation, sampling and environmental information

isolation

  • @ref: 7777
  • sample type: terrestrial hot spring
  • geographic location: Kamchatka Peninsula, Uzon Caldera (N 54° 49' E 160° 01')
  • country: Russia
  • origin.country: RUS
  • continent: Asia
  • latitude: 54.8167
  • longitude: 160.017

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Thermal spring
#Environmental#Terrestrial
#Condition#Thermophilic (>45°C)

Safety information

risk assessment

  • @ref: 7777
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 7777
  • description: Caldanaerobacter uzonensis strain K67 16S ribosomal RNA gene, partial sequence
  • accession: EF195126
  • length: 1417
  • database: ena
  • NCBI tax ID: 447594

GC content

@refGC-contentmethod
777734.2±0.5thermal denaturation, midpoint method (Tm)
2939934.2

External links

@ref: 7777

culture collection no.: DSM 18923, VKM B-2408

straininfo link

@refpassport
20218http://www.straininfo.net/strains/854903
20218http://www.straininfo.net/strains/854904

Reference

@idauthorscataloguedoi/urltitlejournalpubmedID_cross_reference
7777Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 18923)https://www.dsmz.de/collection/catalogue/details/culture/DSM-18923
20215D.Gleim, M.Kracht, N.Weiss et. al.http://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.htmlProkaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
2580610.1099/ijs.0.012328-0
29399Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information25806