Strain identifier

BacDive ID: 16795

Type strain: No

Species: Caldanaerobacter subterraneus

Strain Designation: SL9

Strain history: <- M.-L. Fardeau, IRD; SL9 <- S. L'Haridon and C. Jeanthon {1998}

NCBI tax ID(s): 911092 (species)

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General

@ref: 5355

BacDive-ID: 16795

DSM-Number: 14441

keywords: 16S sequence, Bacteria, anaerobe, thermophilic

description: Caldanaerobacter subterraneus SL9 is an anaerobe, thermophilic bacterium that was isolated from oil–water mixture samples.

NCBI tax id

  • NCBI tax id: 911092
  • Matching level: species

strain history

  • @ref: 5355
  • history: <- M.-L. Fardeau, IRD; SL9 <- S. L'Haridon and C. Jeanthon {1998}

doi: 10.13145/bacdive16795.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Clostridia
  • order: Thermoanaerobacterales
  • family: Thermoanaerobacteraceae
  • genus: Caldanaerobacter
  • species: Caldanaerobacter subterraneus
  • full scientific name: Caldanaerobacter subterraneus (Fardeau et al. 2000) Fardeau et al. 2004

  • synonyms

    • @ref: 20215
    • synonym: Thermoanaerobacter subterraneus

@ref: 5355

domain: Bacteria

phylum: Firmicutes

class: Clostridia

order: Thermoanaerobacterales

family: Thermoanaerobacteraceae

genus: Caldanaerobacter

species: Caldanaerobacter subterraneus

full scientific name: Caldanaerobacter subterraneus (Fardeau et al. 2000) Fardeau et al. 2004

strain designation: SL9

type strain: no

Culture and growth conditions

culture medium

  • @ref: 5355
  • name: THERMOANAEROBACTER SUBTERRANEUS MEDIUM (DSMZ Medium 899)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/899
  • composition: Name: CALDANAEROBACTER MEDIUM (DSMZ Medium 899) Composition: D-Glucose 3.9604 g/l Na2S2O3 x 5 H2O 2.47525 g/l Yeast extract 1.9802 g/l NH4Cl 0.990099 g/l Na2CO3 0.990099 g/l MgCl2 x 6 H2O 0.990099 g/l L-Cysteine HCl x H2O 0.49505 g/l Na2S x 9 H2O 0.445545 g/l K2HPO4 0.29703 g/l KH2PO4 0.29703 g/l KCl 0.19802 g/l MgSO4 x 7 H2O 0.029703 g/l Nitrilotriacetic acid 0.0148515 g/l NaCl 0.00990099 g/l MnSO4 x H2O 0.00495049 g/l CoSO4 x 7 H2O 0.00178218 g/l ZnSO4 x 7 H2O 0.00178218 g/l CaCl2 x 2 H2O 0.000990099 g/l FeSO4 x 7 H2O 0.000990099 g/l Sodium resazurin 0.00049505 g/l NiCl2 x 6 H2O 0.00029703 g/l AlK(SO4)2 x 12 H2O 0.00019802 g/l CuSO4 x 5 H2O 9.90099e-05 g/l H3BO3 9.90099e-05 g/l Na2MoO4 x 2 H2O 9.90099e-05 g/l Na2WO4 x 2 H2O 3.9604e-06 g/l Na2SeO3 x 5 H2O 2.9703e-06 g/l Distilled water

culture temp

  • @ref: 5355
  • growth: positive
  • type: growth
  • temperature: 70
  • range: thermophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 5355
  • oxygen tolerance: anaerobe

Isolation, sampling and environmental information

isolation

  • @ref: 5355
  • sample type: oil–water mixture samples
  • geographic location: Bassin Parisien, oil field
  • country: France
  • origin.country: FRA
  • continent: Europe

isolation source categories

  • Cat1: #Engineered
  • Cat2: #Industrial
  • Cat3: #Oil reservoir

Safety information

risk assessment

  • @ref: 5355
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Caldanaerobacter subterraneus subsp. subterraneus partial 16S rRNA gene, strain DSM 14441, clone 1FR7499711618ena111823
20218Caldanaerobacter subterraneus subsp. subterraneus partial 16S rRNA gene, strain DSM 14441, clone 2FR7499721549ena111823
20218Caldanaerobacter subterraneus subsp. subterraneus partial 16S rRNA gene, strain DSM 14441, clone 3FR7499731465ena111823

GC content

  • @ref: 5355
  • GC-content: 41

External links

@ref: 5355

culture collection no.: DSM 14441

straininfo link

  • @ref: 85811
  • straininfo: 143364

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
5355Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 14441)https://www.dsmz.de/collection/catalogue/details/culture/DSM-14441
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
85811Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID143364.1StrainInfo: A central database for resolving microbial strain identifiers