Strain identifier

BacDive ID: 16793

Type strain: Yes

Species: Caldanaerobacter subterraneus subsp. yonseiensis

Strain Designation: KB-1

Culture col. no.: DSM 13777, KFCC 11116

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General

@ref: 5161

BacDive-ID: 16793

DSM-Number: 13777

keywords: thermophilic, anaerobe, Bacteria, 16S sequence

description: Caldanaerobacter subterraneus subsp. yonseiensis KB-1 is an anaerobe, thermophilic bacterium that was isolated from mixed sample of mud and water from geothermal hot stream.

strain history: <- Y.-R. Pyun, Yonsei University, Seoul, Republic of Korea; KB-1 <- B.-C. Kim {1998}

doi: 10.13145/bacdive16793.20201210.5

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/firmicutes
  • domain: Bacteria
  • phylum: Firmicutes
  • class: Clostridia
  • order: Thermoanaerobacterales
  • family: Thermoanaerobacteraceae
  • genus: Caldanaerobacter
  • species: Caldanaerobacter subterraneus subsp. yonseiensis
  • full scientific name: Caldanaerobacter subterraneus subsp. yonseiensis (Kim et al. 2001) Fardeau et al. 2004
  • synonyms

    • @ref: 20215
    • synonym: Thermoanaerobacter yonseiensis

@ref: 5161

domain: Bacteria

phylum: Firmicutes

class: Clostridia

order: Thermoanaerobacterales

family: Thermoanaerobacteraceae

genus: Caldanaerobacter

species: Caldanaerobacter subterraneus subsp. yonseiensis

full scientific name: Caldanaerobacter subterraneus subsp. yonseiensis (Kim et al. 2001) Fardeau et al. 2004

strain designation: KB-1

type strain: yes

Culture and growth conditions

culture medium

  • @ref: 5161
  • name: RUMINOCLOSTRIDIUM CELLULOLYTICUM (CM3) MEDIUM (DSMZ Medium 520), anaerobic
  • growth: yes
  • link: https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium520.pdf

culture temp

  • @ref: 5161
  • growth: positive
  • type: growth
  • temperature: 75
  • range: thermophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 5161
  • oxygen tolerance: anaerobe

Isolation, sampling and environmental information

isolation

  • @ref: 5161
  • sample type: mixed sample of mud and water from geothermal hot stream
  • geographic location: Java Island, Sileri
  • country: Indonesia
  • origin.country: IDN
  • continent: Asia

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Aquatic

Safety information

risk assessment

  • @ref: 5161
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
5161Caldanaerobacter subterraneus subsp. yonseiensis partial 16S rRNA gene, type strain DSM 13777T, clone 2HG9701701524ena111519
5161Caldanaerobacter subterraneus subsp. yonseiensis partial 16S rRNA gene, type strain DSM 13777T, clone 3HG9701711587ena111519
5161Caldanaerobacter subterraneus subsp. yonseiensis partial 16S rRNA gene, type strain DSM 13777T, clone 1HG9701691526ena111519

GC content

  • @ref: 5161
  • GC-content: 37
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 5161

culture collection no.: DSM 13777, KFCC 11116

straininfo link

  • @ref: 20218
  • passport: http://www.straininfo.net/strains/163840

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
5161Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 13777)https://www.dsmz.de/collection/catalogue/details/culture/DSM-13777
20215D.Gleim, M.Kracht, N.Weiss et. al.http://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.htmlProkaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274