Strain identifier

BacDive ID: 16788

Type strain: Yes

Species: Melghirimyces algeriensis

Strain Designation: EX, NariEX

Strain history: <- M.-L. Fardeau, IRD, Marseille; EX <- N. A. Addou

NCBI tax ID(s): 910412 (species)

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General

@ref: 17257

BacDive-ID: 16788

DSM-Number: 45474

keywords: genome sequence, 16S sequence, Bacteria, aerobe, spore-forming, thermophilic, Gram-positive

description: Melghirimyces algeriensis EX is an aerobe, spore-forming, thermophilic bacterium that was isolated from soil of salt lake.

NCBI tax id

  • NCBI tax id: 910412
  • Matching level: species

strain history

  • @ref: 17257
  • history: <- M.-L. Fardeau, IRD, Marseille; EX <- N. A. Addou

doi: 10.13145/bacdive16788.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Thermoactinomycetaceae
  • genus: Melghirimyces
  • species: Melghirimyces algeriensis
  • full scientific name: Melghirimyces algeriensis Addou et al. 2012

@ref: 17257

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Bacillales

family: Thermoactinomycetaceae

genus: Melghirimyces

species: Melghirimyces algeriensis

full scientific name: Melghirimyces algeriensis Addou et al. 2012

strain designation: EX, NariEX

type strain: yes

Morphology

cell morphology

@refgram stainconfidence
30067positive
69480positive100

colony morphology

  • @ref: 62037
  • incubation period: 7 days

pigmentation

  • @ref: 30067
  • production: yes

multimedia

  • @ref: 17257
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_45474.jpg
  • caption: Medium 514 55°C
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
17257BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)yeshttps://mediadive.dsmz.de/medium/514Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
17257ISP 2 MEDIUM WITH 10% NACL (DSMZ Medium 1261)yeshttps://mediadive.dsmz.de/medium/1261Name: ISP 2 MEDIUM WITH 10% NACL (DSMZ Medium 1261) Composition: NaCl 100.0 g/l Agar 20.0 g/l Malt extract 10.0 g/l Glucose 4.0 g/l Yeast extract 4.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
17257positivegrowth55thermophilic
30067positivegrowth37-60
62037positivegrowth56thermophilic

culture pH

  • @ref: 30067
  • ability: positive
  • type: growth
  • pH: 5-9.5
  • PH range: alkaliphile

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
30067aerobe
62037aerobe

spore formation

@refspore formationconfidence
69481yes100
69480yes100

halophily

  • @ref: 30067
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 0-21 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3006730089acetate+carbon source
3006716449alanine+carbon source
3006722653asparagine+carbon source
3006735391aspartate+carbon source
3006717057cellobiose+carbon source
3006728757fructose+carbon source
3006717234glucose+carbon source
3006729987glutamate+carbon source
3006717754glycerol+carbon source
3006715428glycine+carbon source
3006725115malate+carbon source
3006717306maltose+carbon source
3006737684mannose+carbon source
3006717268myo-inositol+carbon source
3006726271proline+carbon source
3006716634raffinose+carbon source
3006726546rhamnose+carbon source
3006733942ribose+carbon source
3006730031succinate+carbon source
3006717992sucrose+carbon source
3006726986threonine+carbon source

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentsampling date
17257soil of salt lakeChott Melghir salt lakeAlgeriaDZAAfrica
62037Soil of salt lakeChott Melghir(Southeast Algeria)AlgeriaDZAAfrica2006

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Lake (large)
#Environmental#Terrestrial#Soil
#Condition#Saline

taxonmaps

  • @ref: 69479
  • File name: preview.99_93523.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_358;96_38475;97_48970;98_64314;99_93523&stattab=map
  • Last taxonomy: Melghirimyces algeriensis subclade
  • 16S sequence: HQ383683
  • Sequence Identity:
  • Total samples: 278
  • soil counts: 156
  • aquatic counts: 41
  • animal counts: 76
  • plant counts: 5

Safety information

risk assessment

  • @ref: 17257
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 17257
  • description: Melghirimyces algeriensis strain NariEX 16S ribosomal RNA gene, partial sequence
  • accession: HQ383683
  • length: 1488
  • database: ena
  • NCBI tax ID: 910412

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Melghirimyces algeriensis DSM 45474GCA_900182565scaffoldncbi910412
66792Melghirimyces algeriensis strain DSM 45474910412.3wgspatric910412
66792Melghirimyces algeriensis DSM 454742724679802draftimg910412

GC content

@refGC-contentmethod
1725747.3high performance liquid chromatography (HPLC)
3006747.3

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes100no
motileno80.019no
flagellatedno92.157no
gram-positiveyes89.884yes
anaerobicno98.88no
aerobicyes93.914no
halophileno78.361no
spore-formingyes95.891no
thermophileyes91.637no
glucose-utilyes91.22yes
glucose-fermentno90.939no

External links

@ref: 17257

culture collection no.: DSM 45474, CCUG 59620

straininfo link

  • @ref: 85804
  • straininfo: 399532

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny21856989Melghirimyces algeriensis gen. nov., sp. nov., a member of the family Thermoactinomycetaceae, isolated from a salt lake.Addou AN, Schumann P, Sproer C, Hacene H, Cayol JL, Fardeau MLInt J Syst Evol Microbiol10.1099/ijs.0.028985-02011Aerobiosis, Algeria, Bacillales/*classification/genetics/*isolation & purification/physiology, Bacterial Typing Techniques, Base Composition, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, *Environmental Microbiology, Fatty Acids/analysis, Hydrogen-Ion Concentration, Molecular Sequence Data, Phospholipids/analysis, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sodium Chloride/metabolism, Temperature, Vitamin K 2/analysisGenetics
Phylogeny23024147Polycladomyces abyssicola gen. nov., sp. nov., a thermophilic filamentous bacterium isolated from hemipelagic sediment.Tsubouchi T, Shimane Y, Mori K, Usui K, Hiraki T, Tame A, Uematsu K, Maruyama T, Hatada YInt J Syst Evol Microbiol10.1099/ijs.0.043596-02012Bacillales/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/analysis, Geologic Sediments/*microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, Pacific Ocean, Peptidoglycan/analysis, Phospholipids/analysis, *Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/analysisGenetics
Phylogeny23912721Melghirimyces profundicolus sp. nov., isolated from a deep-sea sediment.Li J, Qin S, You ZQ, Long LJ, Tian XP, Wang FZ, Zhang SInt J Syst Evol Microbiol10.1099/ijs.0.052175-02013Bacillales/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Geologic Sediments/*microbiology, Indian Ocean, Molecular Sequence Data, Peptidoglycan/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistryGenetics

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmedjournal
17257Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 45474)https://www.dsmz.de/collection/catalogue/details/culture/DSM-45474
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
30067Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2642728776041
62037Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 59620)https://www.ccug.se/strain?id=59620
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updates33211880Nucleic Acids Res. 49: D498-D508 2020
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
85804Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID399532.1StrainInfo: A central database for resolving microbial strain identifiers