Strain identifier
BacDive ID: 167819
Type strain:
Species: Acetobacter sicerae
Strain Designation: NCIB 8941
NCBI tax ID(s): 85325 (species)
version 9.1 (current version)
General
@ref: 20215
BacDive-ID: 167819
keywords: genome sequence, 16S sequence, Bacteria, Gram-negative
description: Acetobacter sicerae NCIB 8941 is a Gram-negative bacterium of the family Acetobacteraceae.
NCBI tax id
- NCBI tax id: 85325
- Matching level: species
doi: 10.13145/bacdive167819.20240916.9.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Rhodospirillales
- family: Acetobacteraceae
- genus: Acetobacter
- species: Acetobacter sicerae
- full scientific name: Acetobacter sicerae Li et al. 2014
@ref: 20215
domain: Bacteria
phylum: Pseudomonadota
class: Alphaproteobacteria
order: Rhodospirillales
family: Acetobacteraceae
genus: Acetobacter
species: Acetobacter sicerae
full scientific name: Acetobacter sicerae Li et al. 2014
strain designation: NCIB 8941
type strain: yes
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 97.5
Physiology and metabolism
spore formation
- @ref: 69480
- spore formation: no
- confidence: 93.314
Isolation, sampling and environmental information
taxonmaps
- @ref: 69479
- File name: preview.99_2615.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_29;96_152;97_827;98_2025;99_2615&stattab=map
- Last taxonomy: Acetobacter
- 16S sequence: AJ419840
- Sequence Identity:
- Total samples: 888
- soil counts: 133
- aquatic counts: 132
- animal counts: 499
- plant counts: 124
Safety information
risk assessment
- @ref: 20215
- biosafety level: 1
- biosafety level comment: Risk group
Sequence information
16S sequences
@ref | description | accession | length | database | NCBI tax ID |
---|---|---|---|---|---|
20215 | Acetobacter sicerae 16S rRNA gene, type strain LMG 1531T | AJ419840 | 1440 | nuccore | 85325 |
124043 | Acetobacter sicerae partial 16S rRNA gene, type strain LMG 1531T | AJ130729 | 323 | nuccore | 85325 |
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Acetobacter sicerae LMG 1531 | GCA_011516765 | contig | ncbi | 85325 |
66792 | Acetobacter sicerae strain LMG 1531 | 85325.3 | wgs | patric | 85325 |
Genome-based predictions
predictions
@ref | trait | model | description | prediction | confidence | training_data |
---|---|---|---|---|---|---|
69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | no | 97.5 | no |
69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 93.295 | no |
69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 81.579 | no |
69480 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 93.314 | no |
69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 95.754 | no |
69480 | flagellated | motile2+ | Ability to perform flagellated movement | yes | 70.07 | no |
External links
@ref: 20215
culture collection no.: LMG 1531, NCIMB 8941
straininfo link
- @ref: 115027
- straininfo: 14540
literature
- topic: Phylogeny
- Pubmed-ID: 24763601
- title: Acetobacter sicerae sp. nov., isolated from cider and kefir, and identification of species of the genus Acetobacter by dnaK, groEL and rpoB sequence analysis.
- authors: Li L, Wieme A, Spitaels F, Balzarini T, Nunes OC, Manaia CM, Van Landschoot A, De Vuyst L, Cleenwerck I, Vandamme P
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.058354-0
- year: 2014
- mesh: Acetobacter/*classification/genetics/isolation & purification, Alcoholic Beverages/*microbiology, Amplified Fragment Length Polymorphism Analysis, Bacterial Typing Techniques, Base Composition, Cultured Milk Products/*microbiology, DNA, Bacterial/genetics, Fatty Acids/chemistry, Genes, Bacterial, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Random Amplified Polymorphic DNA Technique, Sequence Analysis, DNA, Ubiquinone/chemistry
- topic2: Transcriptome
Reference
@id | authors | title | doi/url |
---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
115027 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID14540.1 |
124043 | Dr. Isabel Schober, Dr. Julia Koblitz | Data extracted from sequence databases, automatically matched based on designation and taxonomy |