Strain identifier

BacDive ID: 167819

Type strain: Yes

Species: Acetobacter sicerae

Strain Designation: NCIB 8941

NCBI tax ID(s): 85325 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 20215

BacDive-ID: 167819

keywords: genome sequence, 16S sequence, Bacteria, Gram-negative

description: Acetobacter sicerae NCIB 8941 is a Gram-negative bacterium of the family Acetobacteraceae.

NCBI tax id

  • NCBI tax id: 85325
  • Matching level: species

doi: 10.13145/bacdive167819.20240916.9.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Rhodospirillales
  • family: Acetobacteraceae
  • genus: Acetobacter
  • species: Acetobacter sicerae
  • full scientific name: Acetobacter sicerae Li et al. 2014

@ref: 20215

domain: Bacteria

phylum: Pseudomonadota

class: Alphaproteobacteria

order: Rhodospirillales

family: Acetobacteraceae

genus: Acetobacter

species: Acetobacter sicerae

full scientific name: Acetobacter sicerae Li et al. 2014

strain designation: NCIB 8941

type strain: yes

Morphology

cell morphology

  • @ref: 69480
  • gram stain: negative
  • confidence: 97.5

Physiology and metabolism

spore formation

  • @ref: 69480
  • spore formation: no
  • confidence: 93.314

Isolation, sampling and environmental information

taxonmaps

  • @ref: 69479
  • File name: preview.99_2615.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_29;96_152;97_827;98_2025;99_2615&stattab=map
  • Last taxonomy: Acetobacter
  • 16S sequence: AJ419840
  • Sequence Identity:
  • Total samples: 888
  • soil counts: 133
  • aquatic counts: 132
  • animal counts: 499
  • plant counts: 124

Safety information

risk assessment

  • @ref: 20215
  • biosafety level: 1
  • biosafety level comment: Risk group

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20215Acetobacter sicerae 16S rRNA gene, type strain LMG 1531TAJ4198401440nuccore85325
124043Acetobacter sicerae partial 16S rRNA gene, type strain LMG 1531TAJ130729323nuccore85325

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Acetobacter sicerae LMG 1531GCA_011516765contigncbi85325
66792Acetobacter sicerae strain LMG 153185325.3wgspatric85325

Genome-based predictions

predictions

@reftraitmodeldescriptionpredictionconfidencetraining_data
69480gram-positivegram-positivePositive reaction to Gram-stainingno97.5no
69480anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)no93.295no
69480aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)yes81.579no
69480spore-formingspore-formingAbility to form endo- or exosporesno93.314no
69480thermophilicthermophileAbility to grow at temperatures above or equal to 45°Cno95.754no
69480flagellatedmotile2+Ability to perform flagellated movementyes70.07no

External links

@ref: 20215

culture collection no.: LMG 1531, NCIMB 8941

straininfo link

  • @ref: 115027
  • straininfo: 14540

literature

  • topic: Phylogeny
  • Pubmed-ID: 24763601
  • title: Acetobacter sicerae sp. nov., isolated from cider and kefir, and identification of species of the genus Acetobacter by dnaK, groEL and rpoB sequence analysis.
  • authors: Li L, Wieme A, Spitaels F, Balzarini T, Nunes OC, Manaia CM, Van Landschoot A, De Vuyst L, Cleenwerck I, Vandamme P
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.058354-0
  • year: 2014
  • mesh: Acetobacter/*classification/genetics/isolation & purification, Alcoholic Beverages/*microbiology, Amplified Fragment Length Polymorphism Analysis, Bacterial Typing Techniques, Base Composition, Cultured Milk Products/*microbiology, DNA, Bacterial/genetics, Fatty Acids/chemistry, Genes, Bacterial, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Random Amplified Polymorphic DNA Technique, Sequence Analysis, DNA, Ubiquinone/chemistry
  • topic2: Transcriptome

Reference

@idauthorstitledoi/url
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
115027Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID14540.1
124043Dr. Isabel Schober, Dr. Julia KoblitzData extracted from sequence databases, automatically matched based on designation and taxonomy