Strain identifier
BacDive ID: 167819
Type strain: 
Species: Acetobacter sicerae
Strain Designation: NCIB 8941
NCBI tax ID(s): 85325 (species)
version 9.3 (current version)
General
@ref: 20215
BacDive-ID: 167819
keywords: genome sequence, 16S sequence, Bacteria, Gram-negative
description: Acetobacter sicerae NCIB 8941 is a Gram-negative bacterium of the family Acetobacteraceae.
NCBI tax id
- NCBI tax id: 85325
- Matching level: species
doi: 10.13145/bacdive167819.20250331.9.3
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Rhodospirillales
- family: Acetobacteraceae
- genus: Acetobacter
- species: Acetobacter sicerae
- full scientific name: Acetobacter sicerae Li et al. 2014
@ref: 20215
domain: Bacteria
phylum: Pseudomonadota
class: Alphaproteobacteria
order: Rhodospirillales
family: Acetobacteraceae
genus: Acetobacter
species: Acetobacter sicerae
full scientific name: Acetobacter sicerae Li et al. 2014
strain designation: NCIB 8941
type strain: yes
Morphology
cell morphology
| @ref | gram stain | confidence |
|---|---|---|
| 125439 | negative | 98.9 |
| 125438 | negative | 97.5 |
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 125438 | no | 93.314 |
| 125439 | no | 98.9 |
Isolation, sampling and environmental information
taxonmaps
- @ref: 69479
- File name: preview.99_2615.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_29;96_152;97_827;98_2025;99_2615&stattab=map
- Last taxonomy: Acetobacter
- 16S sequence: AJ419840
- Sequence Identity:
- Total samples: 888
- soil counts: 133
- aquatic counts: 132
- animal counts: 499
- plant counts: 124
Safety information
risk assessment
- @ref: 20215
- biosafety level: 1
- biosafety level comment: Risk group
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20215 | Acetobacter sicerae 16S rRNA gene, type strain LMG 1531T | AJ419840 | 1440 | nuccore | 85325 |
| 124043 | Acetobacter sicerae partial 16S rRNA gene, type strain LMG 1531T | AJ130729 | 323 | nuccore | 85325 |
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Acetobacter sicerae LMG 1531 | GCA_011516765 | contig | ncbi | 85325 |
| 66792 | Acetobacter sicerae strain LMG 1531 | 85325.3 | wgs | patric | 85325 |
Genome-based predictions
predictions
| @ref | model | trait | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positive | Positive reaction to Gram-staining | no | 97.5 | no |
| 125438 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 93.295 | no |
| 125438 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 81.579 | no |
| 125438 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 93.314 | no |
| 125438 | thermophile | thermophilic | Ability to grow at temperatures above or equal to 45°C | no | 95.754 | no |
| 125438 | motile2+ | flagellated | Ability to perform flagellated movement | yes | 70.07 | no |
| 125439 | BacteriaNet | spore_formation | Ability to form endo- or exospores | no | 98.9 | |
| 125439 | BacteriaNet | motility | Ability to perform movement | yes | 82.1 | |
| 125439 | BacteriaNet | gram_stain | Reaction to gram-staining | negative | 98.9 | |
| 125439 | BacteriaNet | oxygen_tolerance | Oxygenic conditions needed for growth | aerobe | 78.9 |
External links
@ref: 20215
culture collection no.: LMG 1531, NCIMB 8941
straininfo link
- @ref: 115027
- straininfo: 14540
literature
- topic: Phylogeny
- Pubmed-ID: 24763601
- title: Acetobacter sicerae sp. nov., isolated from cider and kefir, and identification of species of the genus Acetobacter by dnaK, groEL and rpoB sequence analysis.
- authors: Li L, Wieme A, Spitaels F, Balzarini T, Nunes OC, Manaia CM, Van Landschoot A, De Vuyst L, Cleenwerck I, Vandamme P
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.058354-0
- year: 2014
- mesh: Acetobacter/*classification/genetics/isolation & purification, Alcoholic Beverages/*microbiology, Amplified Fragment Length Polymorphism Analysis, Bacterial Typing Techniques, Base Composition, Cultured Milk Products/*microbiology, DNA, Bacterial/genetics, Fatty Acids/chemistry, Genes, Bacterial, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Random Amplified Polymorphic DNA Technique, Sequence Analysis, DNA, Ubiquinone/chemistry
- topic2: Transcriptome
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |
| 115027 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID14540.1 |
| 124043 | Isabel Schober, Julia Koblitz | Data extracted from sequence databases, automatically matched based on designation and taxonomy | |
| 125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann | Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets | 10.1101/2024.08.12.607695 |
| 125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy | deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 | https://github.com/GenomeNet/deepG |