Strain identifier
BacDive ID: 167818
Type strain: 
Species: Paenibacillus allorhizosphaerae
Strain Designation: JJ-447
Strain history: <- P. Kämpfer, Justus-Liebig-Universität, Giessen, Germany <- J. A. McInroy, Auburn University, USA; JJ-447
NCBI tax ID(s): 2849866 (species)
version 9.2 (current version)
General
@ref: 20215
BacDive-ID: 167818
DSM-Number: 110507
keywords: genome sequence, 16S sequence, Bacteria, spore-forming, mesophilic
description: Paenibacillus allorhizosphaerae JJ-447 is a spore-forming, mesophilic bacterium that was isolated from toot surface of Zea mays.
NCBI tax id
- NCBI tax id: 2849866
- Matching level: species
strain history
- @ref: 69089
- history: <- P. Kämpfer, Justus-Liebig-Universität, Giessen, Germany <- J. A. McInroy, Auburn University, USA; JJ-447
doi: 10.13145/bacdive167818.20241212.9.2
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Paenibacillaceae
- genus: Paenibacillus
- species: Paenibacillus allorhizosphaerae
- full scientific name: Paenibacillus allorhizosphaerae Kämpfer et al. 2021
@ref: 20215
domain: Bacteria
phylum: Bacillota
class: Bacilli
order: Caryophanales
family: Paenibacillaceae
genus: Paenibacillus
species: Paenibacillus allorhizosphaerae
full scientific name: Paenibacillus allorhizosphaerae Kämpfer et al. 2021
strain designation: JJ-447
type strain: yes
Culture and growth conditions
culture medium
- @ref: 69089
- name: CASO AGAR (MERCK 105458) (DSMZ Medium 220)
- growth: yes
- link: https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium220.pdf
culture temp
- @ref: 69089
- growth: positive
- type: growth
- temperature: 30
Physiology and metabolism
spore formation
- @ref: 69480
- spore formation: yes
- confidence: 94.204
Isolation, sampling and environmental information
isolation
- @ref: 69089
- sample type: toot surface of Zea mays
- geographic location: Dunbar, Nebraska
- country: USA
- origin.country: USA
- continent: North America
Sequence information
16S sequences
- @ref: 20215
- description: Paenibacillus allorhizosphaerae strain JJ-447 16S ribosomal RNA gene, partial sequence
- accession: MZ352766
- length: 1461
- database: nuccore
- NCBI tax ID: 2849866
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Paenibacillus allorhizosphaerae CIP 111802 | GCA_910594985 | scaffold | ncbi | 2849866 |
| 66792 | Paenibacillus sp. JJ-447 strain CIP111802 | 2849866.3 | wgs | patric | 2849866 |
Genome-based predictions
predictions
| @ref | trait | model | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 62.032 | no |
| 69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 91.794 | no |
| 69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 71.324 | no |
| 69480 | spore-forming | spore-forming | Ability to form endo- or exospores | yes | 94.204 | no |
| 69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 94.869 | yes |
| 69480 | flagellated | motile2+ | Ability to perform flagellated movement | yes | 82.943 | no |
External links
@ref: 20215
culture collection no.: CCM 9021, LMG 31601, CIP 111802, DSM 110507
straininfo link
- @ref: 115026
- straininfo: 404638
literature
- topic: Phylogeny
- Pubmed-ID: 34672916
- title: Paenibacillus allorhizosphaerae sp. nov., from soil of the rhizosphere of Zea mays.
- authors: Kampfer P, Busse HJ, McInroy JA, Clermont D, Criscuolo A, Glaeser SP
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijsem.0.005051
- year: 2021
- mesh: Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Nucleic Acid Hybridization, *Paenibacillus/classification/isolation & purification, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, *Rhizosphere, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/analogs & derivatives/chemistry, Zea mays/*microbiology
- topic2: Transcriptome
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69089 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-110507 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 110507) | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 115026 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID404638.1 |