Strain identifier
version 9.1 (current version)
General
@ref: 20215
BacDive-ID: 167813
keywords: genome sequence, 16S sequence, Bacteria, anaerobe
description: Gemmiger formicilis ATCC 27749 is an anaerobe bacterium of the family Oscillospiraceae.
NCBI tax id
- NCBI tax id: 745368
- Matching level: species
doi: 10.13145/bacdive167813.20240916.9.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Clostridia
- order: Eubacteriales
- family: Oscillospiraceae
- genus: Gemmiger
- species: Gemmiger formicilis
- full scientific name: Gemmiger formicilis Gossling and Moore 1975 (Approved Lists 1980)
@ref: 20215
domain: Bacteria
phylum: Bacillota
class: Clostridia
order: Eubacteriales
family: Oscillospiraceae
genus: Gemmiger
species: Gemmiger formicilis
full scientific name: Gemmiger formicilis Gossling and Moore 1975 (Approved Lists 1980)
type strain: yes
Physiology and metabolism
oxygen tolerance
- @ref: 69480
- oxygen tolerance: anaerobe
- confidence: 93.962
Isolation, sampling and environmental information
taxonmaps
- @ref: 69479
- File name: preview.99_12348.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_286;96_6297;97_7555;98_9300;99_12348&stattab=map
- Last taxonomy: Gemmiger formicilis
- 16S sequence: GU562446
- Sequence Identity:
- Total samples: 155422
- soil counts: 1289
- aquatic counts: 2746
- animal counts: 151032
- plant counts: 355
Safety information
risk assessment
- @ref: 20215
- biosafety level: 1
- biosafety level comment: Risk group
Sequence information
16S sequences
- @ref: 20215
- description: Gemmiger formicilis strain ATCC 27749 16S ribosomal RNA gene, partial sequence
- accession: GU562446
- length: 1426
- database: nuccore
- NCBI tax ID: 745368
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Gemmiger formicilis ATCC 27749 | GCA_900167555 | scaffold | ncbi | 745368 |
| 66792 | Gemmiger formicilis strain ATCC 27749 | 745368.3 | wgs | patric | 745368 |
Genome-based predictions
predictions
| @ref | trait | model | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 68.496 | no |
| 69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | yes | 93.962 | no |
| 69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | no | 99.127 | no |
| 69480 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 65.737 | no |
| 69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 92.554 | no |
| 69480 | flagellated | motile2+ | Ability to perform flagellated movement | no | 82.871 | no |
External links
@ref: 20215
culture collection no.: ATCC 27749
straininfo link
- @ref: 115023
- straininfo: 39155
literature
- topic: Phylogeny
- Pubmed-ID: 27154556
- title: Ruthenibacterium lactatiformans gen. nov., sp. nov., an anaerobic, lactate-producing member of the family Ruminococcaceae isolated from human faeces.
- authors: Shkoporov AN, Chaplin AV, Shcherbakova VA, Suzina NE, Kafarskaia LI, Bozhenko VK, Efimov BA
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijsem.0.001143
- year: 2016
- mesh: Adult, Bacterial Typing Techniques, Base Composition, Child, Preschool, Clostridiales/*classification/genetics/isolation & purification, DNA, Bacterial/genetics, Fatty Acids/chemistry, Feces/*microbiology, Gram-Positive Bacteria/genetics, Humans, Lactic Acid/*biosynthesis, Male, *Phylogeny, RNA, Ribosomal, 16S/genetics, Russia, Sequence Analysis, DNA
- topic2: Pathogenicity
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
| 115023 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID39155.1 |